Bioconductor Packages

Plots For Visualising Cell-Cell Interactions

Co-expression Modules identification Tool

Statistical analysis for the Colony Formation Assay

Fast and accurate scRNA-seq cell type identification

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution

Add-on to CellNOptR: Discretized time treatments

Integration of CellNOptR to add missing links

ODE add-on to CellNOptR

Coordinate Covariation Analysis

A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing

Combinatorial Polyfunctionality Analysis of Single Cells

Cell OrderiNg by FluorEScence Signal

Data normalization by matrix raking

COexpression Tables ANalysis

Design of guide RNAs in CRISPR genome-editing systems

CRImage a package to classify cells and calculate tumour cellularity

Statistical tools for the analysis of ChIP-seq data

Package for CTDbase data query, visualization and downstream analysis

Identification of cell-type-specific spatially variable genes accounting for excess zeros

Data companion to CTexploreR

Explores Cancer Testis Genes

Calibration curves for targeted proteomics, lipidomics and metabolomics data

A mass spectrometry imaging toolbox for statistical analysis

This package provides methods for analysing spatial transcriptomics data and for discovering gene clusters

Causal network analysis methods

Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis

Supervised Non-negative Matrix Factorization for Dimensional Reduction in Single-Cell Analysis

Evaluate Cellspecific Mixing

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

Reconstruction, visualization and analysis of branching trajectories

An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates

R interface to a subset of OpenBabel functionalities

Cheminformatics Toolkit for R

CHiCAGO: Capture Hi-C Analysis of Genomic Organization

Analysis of single-cell epigenomics datasets with a Shiny App

Infrastructure for Chromatographic Mass Spectrometry Data

Infers clonal composition of a tumor

Clustering of MS2 Spectra for Metabolite Identification

Clustering of Immune Receptor Repertoires

Coordinated Gene Activity in Pattern Sets

Compare genomic intervals tool - Automated, complete, reproducible and clear report about genomic and epigenomic data sets

Complexome Profiling Analysis package

Creating and Using (Chemical) Compound Annotation Databases

Coralysis sensitive identification of imbalanced cell types and states in single-cell data via multi-level integration

Classes and Functions to Serve as the Basis for Other 'Gx' Packages

Coverage visualization package for R

An R package for colorectal cancer screening and microbiome analysis

Tools for counting and visualising mutations in a target location

Queries the Human Cell Atlas