Skip to content

standR

Bioc current

Spatial transcriptome analyses of Nanostring's DSP data in R

v1.16.0 · software · MIT + file LICENSE
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.15 · Apr 27, 2022

Current · Requires R 4.6

1.0 In 9 of 49 releases 3.23

Description

standR is an user-friendly R package providing functions to assist conducting good-practice analysis of Nanostring's GeoMX DSP data. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. standR allows data inspection, quality control, normalization, batch correction and evaluation with informative visualizations.

Code & tests

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Technology › Spatial
Software › ResearchField › Transcriptomics
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › DifferentialExpression
Software › WorkflowStep › QualityControl
Software › WorkflowStep › Normalization
Software › Technology › ExperimentHubSoftware

Depended on by (1)

Bioconductor (1)

shinyDSP

People