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scDiagnostics

Bioc current

Cell type annotation diagnostics

v1.6.0 · software · Artistic-2.0
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Release Lineage

Entered 3.20 · Oct 30, 2024

Current · Requires R 4.6

1.0 In 4 of 49 releases 3.23

Description

The scDiagnostics package provides diagnostic plots to assess the quality of cell type assignments from single cell gene expression profiles. The implemented functionality allows to assess the reliability of cell type annotations, investigate gene expression patterns, and explore relationships between different cell types in query and reference datasets allowing users to detect potential misalignments between reference and query datasets. The package also provides visualization capabilities for diagnostics purposes.

Code

Code metrics have not been computed for this package yet.

Topics

Software › WorkflowStep › Annotation
Software › StatisticalMethod › Classification
Software › StatisticalMethod › Clustering
Software › AssayDomain › GeneExpression
Software › Technology › Sequencing › RNASeq
Software › Technology › SingleCell
Software
Software › ResearchField › Transcriptomics

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