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lumi

Bioc current

BeadArray Specific Methods for Illumina Methylation and Expression Microarrays

v2.64.0 · software · LGPL (>= 2)
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Release Lineage

Entered 2.0 · Apr 26, 2007

Current · Requires R 4.6

1.0 In 39 of 49 releases 3.23

Description

The lumi package provides an integrated solution for the Illumina microarray data analysis. It includes functions of Illumina BeadStudio (GenomeStudio) data input, quality control, BeadArray-specific variance stabilization, normalization and gene annotation at the probe level. It also includes the functions of processing Illumina methylation microarrays, especially Illumina Infinium methylation microarrays.

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Topics

Software › Technology › Microarray
Software › Technology › Microarray › OneChannel
Software › WorkflowStep › Preprocessing
Software › AssayDomain › DNAMethylation
Software › WorkflowStep › QualityControl
Software › Technology › Microarray › TwoChannel

Depended on by (22)

Bioconductor (21)

arrayMvout beadarray blima ffpe Harman iCheck methylumi tigre wateRmelon MineICA lumiHumanIDMapping lumiMouseIDMapping lumiRatIDMapping ffpeExampleData lumiBarnes MAQCsubset mvoutData anamiR eQTL MAQCsubsetILM methyAnalysis

CRAN (1)

maGUI

People

Lei Huang