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looplook

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Integrative Suite for Target Assignment and Functional Annotation of Chromatin Interactions

v0.99.13 · GPL (>= 3)
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Description

Provides a versatile suite for target assignment and functional annotation of 3D chromatin interactions. Leverages customizable genomic feature integration, expression-aware refinement, and connected-components clustering to prioritize biologically relevant chromatin loops. The pipeline also supports multi-omics data integration, functional annotation (GO, GSEA, motif, PPI), and publication-ready visualization.

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Topics

Software
Software › ResearchField › Epigenetics
Software › Technology › Sequencing › HiC
Software › Technology › Sequencing › ChIPSeq
Software › Technology › Sequencing › RNASeq
Software › AssayDomain › GeneExpression
Software › ResearchField › FunctionalGenomics
Software › BiologicalQuestion › GenomeAnnotation
Software › ResearchField › SystemsBiology
Software › WorkflowStep › Visualization
Software › StatisticalMethod › Classification
Software › StatisticalMethod › Clustering
Software › WorkflowStep › QualityControl
Software › Technology › Spatial
Software › WorkflowStep › Visualization › Network
Software › BiologicalQuestion › Coverage
Software › BiologicalQuestion › GeneTarget

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