SpaceTrooper

Description

SpaceTrooper performs Quality Control analysis using data driven GLM models of Image-Based spatial data, providing exploration plots, QC metrics computation, outlier detection. It implements a GLM strategy for the detection of low quality cells in imaging-based spatial data (Transcriptomics and Proteomics). It additionally implements several plots for the visualization of imaging based polygons through the ggplot2 package.

Code

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Topics

Depended on by (1)

People

• Dario Righelli author maintainer
• Benedetta Banzi author
• Silvio Bicciato author
• Mattia Forcato contributor
• Matteo Marchionni author
• Davide Risso contributor
• Oriana Romano contributor