CRAN task view
Phylogenetics
Maintained by William Gearty, Brian O'Meara, Jacob Berv, Gustavo A. Ballen, Diniz Ferreira, Hilmar Lapp, Lars Schmitz, Martin R. Smith, Nathan S. Upham, Jonathan A. Nations · view source ↗
107
Packages
4
Core
2021
Tracked since
Recent additions and removals
Packages
| Package | Downloads 30d | Doc coverage | Since |
|---|---|---|---|
| adephylo | 6,451 | 100% | ≥ 2021-12 |
| adiv | 452 | – | ≥ 2021-12 |
| apecore | 123,181 | 100% | ≥ 2021-12 |
| apex | 1,929 | 100% | ≥ 2021-12 |
| aphid | 502 | – | ≥ 2021-12 |
| babette | 366 | 100% | 2024-06 |
| BAMMtools | 1,246 | 100% | ≥ 2021-12 |
| beastier | 421 | 100% | 2022-10 |
| beautier | 458 | 100% | 2022-10 |
| betapart | 3,632 | – | ≥ 2021-12 |
| BoSSA | 311 | 100% | ≥ 2021-12 |
| brms | 56,106 | 100% | ≥ 2021-12 |
| CALANGO | 307 | 100% | 2022-10 |
| caper | 3,241 | – | ≥ 2021-12 |
| castor | 1,672 | 100% | 2022-10 |
| Claddis | 539 | 100% | 2022-10 |
| convevol | 349 | 100% | ≥ 2021-12 |
| corHMM | 821 | 100% | 2024-12 |
| CRABS | 275 | 100% | 2023-04 |
| DAMOCLES | 301 | 100% | ≥ 2021-12 |
| DDD | 762 | 100% | ≥ 2021-12 |
| deeptime | 845 | 100% | 2022-10 |
| dendextend | 68,576 | 99% | ≥ 2021-12 |
| dispRity | 673 | 100% | ≥ 2021-12 |
| distory | 483 | 100% | ≥ 2021-12 |
| diversitree | 815 | 100% | ≥ 2021-12 |
| do3PCA | 219 | 100% | 2024-12 |
| entropart | 491 | 100% | ≥ 2021-12 |
| epm | 299 | 100% | 2022-10 |
| evobiR | 0 | 100% | ≥ 2021-12 |
| EvoPhylo | 249 | 100% | 2022-10 |
| FossilSim | 302 | 100% | 2022-10 |
| geigercore | 5,230 | 100% | ≥ 2021-12 |
| geomorph | 2,397 | 100% | ≥ 2021-12 |
| ggmuller | 447 | 100% | ≥ 2021-12 |
| ggplot2 | 2,590,367 | 100% | ≥ 2021-12 |
| GUniFrac | 1,701 | 100% | ≥ 2021-12 |
| hisse | 389 | 100% | 2022-10 |
| idendr0 | 413 | 100% | ≥ 2021-12 |
| ips | 786 | 100% | ≥ 2021-12 |
| markophylo | 271 | 100% | ≥ 2021-12 |
| mcbette | 245 | 100% | 2024-12 |
| MCMCglmm | 8,098 | 100% | ≥ 2021-12 |
| metacoder | 896 | 99% | 2026-04 |
| metafor | 50,432 | 100% | ≥ 2021-12 |
| motmot | 392 | 100% | 2022-10 |
| MPSEM | 447 | 100% | ≥ 2021-12 |
| MSCquartets | 462 | 100% | 2024-12 |
| mvMORPH | 723 | 100% | ≥ 2021-12 |
| nLTT | 456 | 100% | 2024-01 |
| ouch | 503 | 100% | ≥ 2021-12 |
| OUwie | 675 | 100% | ≥ 2021-12 |
| paleobuddy | 193 | 100% | 2022-10 |
| paleotree | 1,028 | 100% | ≥ 2021-12 |
| paleoTS | 399 | 100% | ≥ 2021-12 |
| PBD | 274 | 100% | ≥ 2021-12 |
| phangorn | 21,901 | 100% | ≥ 2021-12 |
| phyclust | 2,529 | 100% | ≥ 2021-12 |
| phyext2 | 197 | – | ≥ 2021-12 |
| phylobasecore | 5,446 | 100% | ≥ 2021-12 |
| phylocanvas | 152 | 100% | ≥ 2021-12 |
| PHYLOGR | 204 | 100% | ≥ 2021-12 |
| phylogram | 935 | 82% | ≥ 2021-12 |
| phylolm | 12,807 | – | ≥ 2021-12 |
| phyloregion | 407 | 100% | 2022-10 |
| phylosignal | 442 | 100% | 2022-10 |
| phylotate | 441 | 100% | 2022-10 |
| phyloTop | 301 | 100% | ≥ 2021-12 |
| phyreg | 127 | 100% | ≥ 2021-12 |
| phytoolscore | 13,726 | 100% | ≥ 2021-12 |
| picante | 5,635 | – | ≥ 2021-12 |
| pmc | 253 | 100% | ≥ 2021-12 |
| poweRbal | 294 | 100% | 2024-12 |
| Quartet | 631 | 100% | 2022-10 |
| RevGadgets | 269 | 100% | 2022-12 |
| Revticulate | 233 | 92% | 2022-10 |
| rncl | 12,031 | 100% | ≥ 2021-12 |
| RNeXML | 4,822 | 100% | ≥ 2021-12 |
| Rogue | 728 | 100% | 2022-10 |
| rotl | 8,232 | 100% | ≥ 2021-12 |
| Rphylopars | 604 | 100% | 2022-10 |
| RRPP | 2,041 | 100% | 2022-10 |
| secsse | 371 | 100% | 2022-10 |
| slouch | 224 | 100% | 2024-12 |
| strap | 696 | 100% | ≥ 2021-12 |
| surface | 267 | 100% | 2022-10 |
| taxize | 5,298 | 100% | ≥ 2021-12 |
| taxodist | 242 | 100% | 2026-07 |
| tbea | 313 | 100% | 2024-06 |
| TBRDist | 392 | 100% | 2022-10 |
| TESS | – | 100% | ≥ 2021-12 |
| tidytree | 84,879 | 96% | ≥ 2021-12 |
| tracerer | 384 | 100% | 2022-10 |
| treats | 355 | 100% | 2024-12 |
| treebalance | 560 | 100% | 2024-01 |
| treebase | 407 | 100% | ≥ 2021-12 |
| treedater | 295 | 100% | ≥ 2021-12 |
| TreeDist | 1,251 | 100% | 2022-10 |
| TreeSearch | 546 | 100% | 2022-10 |
| TreeSim | 1,798 | 100% | ≥ 2021-12 |
| TreeSimGM | 184 | 100% | 2024-12 |
| treesliceR | 234 | 88% | 2025-09 |
| treespace | 354 | 100% | 2022-10 |
| treestats | 595 | 100% | 2024-01 |
| TreeTools | 2,496 | 100% | 2022-10 |
| vegan | 136,006 | 100% | ≥ 2021-12 |
| windex | 208 | – | ≥ 2021-12 |
Membership from the CRAN Task Views project. A “≥ YYYY-MM” join date means membership predates the view repo’s first observed commit.