This package was removed from CRAN on 2024-12-16. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.9.5, its last release before removal.

phyloclim

0.9.5

Integrating Phylogenetics and Climatic Niche Modeling

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Christoph Heibl7 releasesCRAN page ↗

Implements some methods in phyloclimatic modeling: estimation of ancestral climatic niches, age-range-correlation, niche equivalency test and background-similarity test.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/phyloclim/phyloclim_0.9.5.tar.gz"
pkgFile <- "phyloclim_0.9.5.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.9.5) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-phyloclim

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-phyloclim

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 71%
References docs: 83%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on87 r2u28 autocran86 c2d4u

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (2)

ape raster

Imports (2)

methodssp

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Other (2)

Christoph Heibl

Contributor

Clement Calenge (\code{import.ascii})

Contributor · added in 0.9-0

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2024-12-16
issues were not corrected in time
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.9.5
2018-05-25 · diff ↗
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
0.9-4
2013-07-13 · diff ↗
0.9-3
2013-04-07 · diff ↗

Show 11 earlier events

R
R 3.0.0 released · 2013-04-03
0.9-0
2012-09-22 · diff ↗
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
0.8.1
2011-01-21 · diff ↗
0.6
2010-10-18 · diff ↗
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
0.0.1
2009-11-27
R
R 2.10.0 released · 2009-10-26

Package metadata

Total releases: 7
License: GPL (>= 2) OSI
Bundled data: 47 KB / 5 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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