visOmopResults

1.5.0

Graphs and Tables for OMOP Results

13packages depend

14.9Kdownloads / year

91.6%test coverage

13/13checks pass

Overview

About

Maintained by Núria Mercadé-BesoraFirst published 2024-02-0620 releasesCRAN page ↗GitHub ↗

Provides methods to transform omop_result objects into formatted tables and figures, facilitating the visualisation of study results working with the Observational Medical Outcomes Partnership (OMOP) Common Data Model.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("visOmopResults", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("darwin-eu/visOmopResults")

Development version from darwin-eu/visOmopResults. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-visomopresults

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-visOmopResults

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-visOmopResults

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 8.4 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.77

91.6%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-07
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 298 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 96%
Return-value docs: 81%
References docs: 0%

Downloads

14.9K

CRAN downloads in the past year

Rank #3,820 · ~41/day · ~1.2K/mo

Releases R versions

Daily download trend is not available in this view yet.

72530 days

2.7K90 days

14.9K1 year

Compare downloads with other packages →

Also on382 r2u31 autocran

Repository

GitHub ↗ darwin-eu/visomopresults

0Stars

0Forks

0Open issues

0Open PRs

13Releases

552Commits

5Contributors

License Apache-2.0 · 552 commits · Last activity 2026-05-18

Releases over time

2025-06-20 · 72026-07-07 · 13

Repository practices

Upstream repositoryBeta

7 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/darwin-eu/visomopresults on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

38 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (11)

brand.yml cli dplyr generics glue omopgenerics (>= 0.3.1)purrr rlang stringr systemfonts tidyr

LinkingTo (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

13direct

0indirect

OmopViewer CodelistGenerator CohortCharacteristics CohortConstructor CohortSurvival CohortSymmetry DrugUtilisation IncidencePrevalence MeasurementDiagnostics OmopConstructor OmopSketch PhenotypeR TreatmentPatterns

Code & Tests

Code Composition

R 8,560 (72%)Vignettes 1,679 (14%)Rd 1,451 (12%)Markdown 239 (2%)

Code characteristics

Cyclomatic complexity: 3.0 median / 23 max
Test cases: 57 / 0.77 per code line

Test coverage

Line coverage

92%

Expression

91.6%

Tests / Examples

91.6% / 75% ex

Functions

105 25 exported

Complexity

4.4 avg / 23 max

Call network

105 nodes / 176 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

105 functions

Function	Cyclo	Coverage
plotColumns exp	1	0%
plotStyle exp	1	0%
tableColumns exp	1	0%
tableStyle exp	1	0%
getNonNaIndices	1	0%
sankeyPlot	5	0%

People & History

People (6)

Maintainer (1)

Núria Mercadé-Besora

Author, Maintainer

Authors (2)

Núria Mercadé-Besora

Author, Maintainer

Martí Català

Author · added in 0.4.0

Contributors (4)

Marta Alcalde-Herraiz

Contributor · added in 1.0.1

Edward Burn

Contributor · added in 0.5.0

Yuchen Guo

Contributor · added in 0.4.0

Elin Rowlands

Contributor · added in 0.5.0

Listed in earlier versions (1)

Marti Catala

no longer listed · 0.0.1 to 0.3.0

Package Timeline

20 releases. Pick two to compare their code metrics. R releases are shown for context.

1.5.0Latest
2026-05-18 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.4.2
2026-02-04 · diff ↗
1.4.1
2026-02-02 · diff ↗
1.4.0
2025-11-07 · diff ↗
1.3.1
2025-10-09 · diff ↗
1.3.0
2025-10-05 · diff ↗
1.2.0
2025-09-02 · diff ↗
1.1.1
2025-06-19 · diff ↗
1.1.0
2025-05-21 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.2
2025-03-06 · diff ↗
1.0.1
2025-02-27 · diff ↗
1.0.0
2025-01-15 · diff ↗
0.5.1
2024-12-11 · diff ↗
0.5.0
2024-11-24 · diff ↗

Show 8 earlier events

0.4.0
2024-09-24 · diff ↗
0.3.0
2024-05-02 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.2.1
2024-04-02 · diff ↗
0.2.0
2024-03-21 · diff ↗
0.1.1
2024-03-13 · diff ↗
0.0.1
2024-02-06
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-02-06
Total releases: 20 / 2 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1
Bundled data: 14 KB / 1 file
Download size: 2.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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