MeasurementDiagnostics

0.3.0

Diagnostics for Lists of Codes Based on Measurements

2packages depend

27.3Kdownloads / year

86.5%test coverage

13/13checks pass

Overview

About

Maintained by Nuria Mercade-BesoraFirst published 2025-07-114 releasesCRAN page ↗GitHub ↗

Diagnostics of list of codes based on concepts from the domains measurement and observation. This package works for data mapped to the Observational Medical Outcomes Partnership Common Data Model.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("MeasurementDiagnostics", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ohdsi/MeasurementDiagnostics")

Development version from ohdsi/MeasurementDiagnostics. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-measurementdiagnostics

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-MeasurementDiagnostics

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-MeasurementDiagnostics

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 16.1 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.73

86.5%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-24
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-17
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-15
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

ERROR2026-05-13
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 6,399 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 81%
Return-value docs: 100%
References docs: 0%

Downloads

27.3K

CRAN downloads in the past year

Rank #6,500 · ~75/day · ~2.3K/mo

Releases R versions

Daily download trend is not available in this view yet.

49630 days

1.5K90 days

27.3K1 year

Compare downloads with other packages →

Also on131 r2u35 autocran

Repository

GitHub ↗ ohdsi/measurementdiagnostics

2Stars

2Forks

10Open issues

2Open PRs

3Releases

240Commits

4Contributors

License Apache-2.0 · 240 commits · Last activity 2026-03-12 · +100% stars, 30d

Stars over time

2025-06-17 · 12026-07-07 · 2

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/ohdsi/measurementdiagnostics on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

27 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (13)

cli clock CohortCharacteristics CohortConstructor (>= 0.4.0)DBI dplyr glue omopgenerics PatientProfiles purrr rlang stringr tidyr

LinkingTo (0)

none

Suggests (14)

CDMConnector CodelistGenerator visOmopResults duckdb knitr omock rmarkdown testthat ggplot2 gt flextable RPostgres lubridate odbc

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

PhenotypeR OmopViewer

Code & Tests

Code Composition

R 3,540 (71%)Rd 818 (16%)Vignettes 624 (13%)

Code characteristics

Cyclomatic complexity: 3.0 median / 27 max
Test cases: 16 / 0.73 per code line

Test coverage

Line coverage

87%

Expression

82.4%

Tests / Examples

86.5% / – ex

Functions

31 9 exported

Complexity

4.2 avg / 27 max

Call network

31 nodes / 33 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

31 functions

Function	Cyclo	Coverage
mockMeasurementDiagnostics exp	1	0%
emptyPlot	1	0%
addIndex	6	22%
getWindowNames	5	30%
validateWindowArgumentMD	6	41%
assertWindowName	4	67%

People & History

People (3)

Maintainer (1)

Nuria Mercade-Besora

Author, Maintainer

Authors (3)

Nuria Mercade-Besora

Author, Maintainer

Marta Alcalde-Herraiz

Author

Edward Burn

Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.3.0Latest
2026-02-17 · current release · diff ↗
0.2.0
2025-12-17 · diff ↗
0.1.0
2025-07-29 · diff ↗
0.0.1
2025-07-11
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-07-11
Total releases: 4 / 1 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1
Download size: 1.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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