CohortSurvival

1.1.2

Estimate Survival from Common Data Model Cohorts

3packages depend

9.6Kdownloads / year

99.6%test coverage

13/13checks pass

Overview

About

Maintained by Kim López-GüellFirst published 2023-12-0716 releasesCRAN page ↗GitHub ↗

Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("CohortSurvival", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("darwin-eu/CohortSurvival")

Development version from darwin-eu/CohortSurvival. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-cohortsurvival

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CohortSurvival

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 11.8 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 1.07

99.6%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-03
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-27
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-12
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-05
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-01
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 8 earlier snapshots

ERROR2026-05-30
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-27
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-17
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-15
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-13
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 1,653 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 8%
Documented parameters: 100%
Return-value docs: 85%
References docs: 0%

Downloads

9.6K

CRAN downloads in the past year

Rank #4,385 · ~26/day · ~797/mo

Releases R versions

Daily download trend is not available in this view yet.

57330 days

2.1K90 days

9.6K1 year

Compare downloads with other packages →

Also on200 r2u29 autocran

Repository

GitHub ↗ darwin-eu/cohortsurvival

5Stars

1Forks

3Open issues

0Open PRs

14Releases

35Commits

3Contributors

License Apache-2.0 · 35 commits · Last activity 2026-07-03 · 0% stars, 30d

Stars over time

2025-06-17 · 42026-07-07 · 5

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/darwin-eu/cohortsurvival on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

29 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (14)

broom cli clock dplyr glue omopgenerics PatientProfiles purrr rlangsurvivalstatsstringr tibble tidyr

LinkingTo (0)

none

Suggests (17)

testthat CodelistGenerator DBI roxygen2 knitr tictoc rmarkdown ggplot2 patchwork cmprsk duckdb gt flextable scales visOmopResults extrafont CDMConnector

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

DrugUtilisation OmopViewer PhenotypeR

Code & Tests

People & History

People (6)

Maintainer (1)

Kim López-Güell

Author, Maintainer · added in 0.6.0

Authors (6)

Kim López-Güell

Author, Maintainer · added in 0.6.0

Edward Burn

Author

Martí Català

Author · added in 1.1.0

Xintong Li

Author

Nuria Mercade-Besora

Author · added in 0.6.0

Danielle Newby

Author

Listed in earlier versions (2)

Marti Catala

no longer listed · 0.2.5 to 1.0.3

Kim Lopez

no longer listed · 0.2.5 to 0.5.2

Package Timeline

16 releases. Pick two to compare their code metrics. R releases are shown for context.

1.1.2Latest
2026-07-03 · current release · diff ↗
1.1.1
2026-05-13 · diff ↗
R
R 4.6.0 released · 2026-04-24
1.1.0
2025-12-04 · diff ↗
1.0.3
2025-08-18 · diff ↗
1.0.2
2025-06-16 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.1
2025-04-02 · diff ↗
1.0.0
2025-03-19 · diff ↗
unarchivedReturned to CRAN
2025-03-19
archivedRemoved from CRAN
2025-03-07
issues were not corrected in time
0.6.2
2025-01-22 · diff ↗
0.6.1
2024-11-28 · diff ↗
0.6.0
2024-11-10 · diff ↗
0.5.2
2024-06-29 · diff ↗
0.5.1
2024-05-18 · diff ↗

Show 6 earlier events

0.5.0
2024-05-06 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.4.0
2024-04-02 · diff ↗
0.3.0
2024-02-08 · diff ↗
0.2.5
2023-12-07
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-12-07
Total releases: 16 / 3 yrs
License: Apache License (>= 2)
Minimum R: ≥ 4.1.0
Download size: 1.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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