Bioconductor Packages

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

MethylAid-summarized data for 2800 Illumina 450k array samples and 2620 EPIC array samples

Collection of Public DNA Methylation Sequencing Datasets

Datasets for benchmarking in microbiome research

Multi-omics data access for studies investigating the effects of aging

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Experimental Data for MutSeqR Examples

Data for the NCIgraph software package

Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package

Nanopore RNA-Seq Example data

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Data required for getting the gene set scores with NetActivity package

Data for NxtIRF

Supporting data for package OMICsPCA

Ob/ob Mice Data on Normal and High Fat Diet

Promoter Capture Hi-C data

expression and copy number data on clear cell renal carcinoma samples

H. sapiens background for PWMEnrich

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Experimental data for the PathNet package

Data package for phylogenetic profile analysis using PhyloProfile tool

SELDI-TOF data of Breast cancer samples

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Test dataset for RMassBank

Example data for the RNAmodR package

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

An RRBS data set with 12 samples and 10,000 simulated DMRs

Gender data for the RUVnormalize package

Companion data package for the ReactomeGSA package

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

RnaSeqSampleSizeData

Supporting datasets for SBGNview package

Sequence data from chromosome 4 of a small-cell lung tumor

Example SpatialFeatureExperiment datasets

SNAGEE data

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

An example dataset for use with the SVM2CRM package

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Integrating Multi-modal Single Cell Experiment datasets

Data supporting the SingleMoleculeFootprinting pkg

An example cancer whole genome sequencing data for the SomatiCA package

Somatic Cancer Alterations

Collection of spatial omics datasets

Affymetrix Spike-In Experiment Data

Part of Affymetrix's Spike-In Experiment Data

Annotated spatial transcriptomics datasets from 10x Xenium, NanoString CosMx and BGI STOmics.