Bioconductor Packages

WGSCS Data for Demonstration Purposes

100+ Curated Breast Cancer Gene Expression Data sets

Manipulation of SQLite-based annotations in Bioconductor

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

AnnotationGx: A package for building, updating and querying an annotation database for pharmaco-genomic data

geneChip Analysis Package

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Data and Files for the AssessORF Package

Gene Expression Atlas query and gene set enrichment package.

Bayesian Analysis of Differential Expression in RNA Sequencing Data

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

BBCAnalyzer: an R/Bioconductor package for visualizing base counts

Predicting binding site consensus from ranked DNA sequences

Barcode Analysis using linear models

Meta-analysis for the metagenomic read counts data from different cohorts

High Performance Data Integration for Large-Scale Analyses of Incomplete Omic Profiles Using Batch-Effect Reduction Trees (BERT)

Correction of batch effects in DNA methylation data

Performs Bayesian GWAS analysis for non-Gaussian data using BG2

Bayesian models for differential gene expression

BLMA: A package for bi-level meta-analysis

Refitting diploid region profiles using a clustering procedure

Model higher-order methylation profiles

R package associated to BREW3R

Tools for the Efficient Analysis of High-Resolution Genomics Data

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

Computational pipeline for computing probability of modification from structure probing experiment data

Gene network reconstruction

Batch Effects Correction with Unknown Subtypes

kallisto | bustools R utilities

Batch Effect Correction with Unknow Subtypes for scRNA-seq data

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

Bioconductor-Friendly Multithreaded BAM Processing

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Basic peak calling on STARR-seq data

Single-cell RNA-seq batch effects correction methods interface

Batch Effects Quality Control Software

Identify Batch-Biased Spatially Variable Genes

BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data

Analysing Illumina BeadArray expression data using Bioconductor

Illumina EPIC data on BeadSorted child saliva cells

Comprehensive Collection of Curated Benchmarking Datasets and their Evaluation

Coordinate-Based Genomic Visualization Package for R

Datasets and test data files for the BentoBox package

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Bias-free Footprint Enrichment Test