Bioconductor Packages

4,656 packages in the Bioconductor catalogue.

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Phylogenetics16

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Showing 1–16 of 16 packages

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Package	Category	Version	First Release	Last Release	Status
CIMICE Bioc CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution	software	1.20.0	3.13	3.23	current
DECIPHER Bioc Tools for curating, analyzing, and manipulating biological sequences	software	3.8.0	2.9	3.23	current
DspikeIn Bioc Estimating Absolute Abundance from Microbial Spike-in Controls	software	1.2.0	3.22	3.23	current
cogeqc Bioc Systematic quality checks on comparative genomics analyses	software	1.16.0	3.15	3.23	current
doubletrouble Bioc Identification and classification of duplicated genes	software	1.12.0	3.17	3.23	current
fastreeR Bioc Phylogenetic, Distance and Other Calculations on VCF and Fasta Files	software	2.2.0	3.15	3.23	current
ggtree Bioc an R package for visualization of tree and annotation data	software	4.2.0	3.1	3.23	current
ggtreeDendro Bioc Drawing 'dendrogram' using 'ggtree'	software	1.14.0	3.16	3.23	current
ggtreeExtra Bioc An R Package To Add Geometric Layers On Circular Or Other Layout Tree Of "ggtree"	software	1.22.1	3.12	3.23	current
ggtreeSpace Bioc Visualizing Phylomorphospaces using 'ggtree'	software	1.8.0	3.19	3.23	current
orthogene Bioc Gene mapping made easy	software	1.18.1	3.14	3.23	current
rhinotypeR Bioc Rhinovirus genotyping	software	1.6.0	3.20	3.23	current
sitePath Bioc Phylogeny-based sequence clustering with site polymorphism	software	1.28.0	3.9	3.23	current
syntenet Bioc Inference And Analysis Of Synteny Networks	software	1.14.0	3.16	3.23	current
tanggle Bioc Visualization of Phylogenetic Networks	software	1.18.0	3.14	3.23	current
treeio Bioc Base Classes and Functions for Phylogenetic Tree Input and Output	software	1.36.1	3.5	3.23	current