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tanggle

Bioc current

Visualization of Phylogenetic Networks

v1.18.0 · software · Artistic-2.0
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Release Lineage

Entered 3.14 · Oct 27, 2021

Current · Requires R 4.6

1.0 In 10 of 49 releases 3.23

Description

Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) <doi:10.1093/bioinformatics/bty633> and 'phangorn' Schliep (2011) <doi:10.1093/bioinformatics/btq706>.

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Topics

Software
Software › WorkflowStep › Visualization
Software › ResearchField › Phylogenetics
Software › WorkflowStep › Alignment
Software › StatisticalMethod › Clustering
Software › WorkflowStep › Alignment › MultipleSequenceAlignment
Software › Infrastructure › DataImport

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