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fastreeR

Bioc current

Phylogenetic, Distance and Other Calculations on VCF and Fasta Files

v2.2.0 · software · GPL-3
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Release Lineage

Entered 3.15 · Apr 27, 2022

Current · Requires R 4.6

1.0 In 9 of 49 releases 3.23

Description

Calculate distances, build phylogenetic trees or perform hierarchical clustering between the samples of a VCF or FASTA file. Functions are implemented in Java-11 and called via rJava. Parallel implementation that operates directly on the VCF or FASTA file for fast execution.

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Topics

Software › ResearchField › Phylogenetics
Software › ResearchField › Metagenomics
Software › StatisticalMethod › Clustering

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