Bioconductor Packages

Annotated variants on the chromosome 21, human genome 19, Ashkenazim Trio son sample

A normalization method for Copy Number Aberration in cancer samples

Summarization and expression/phenotype association of CNV ranges

Coordinate Covariation Analysis

Tools for counting and visualising mutations in a target location

An R Package for Estimating Copy Number Levels of Viral Genome Segments Using Base-Resolution Read Depth Profile

Delineate outstanding genomic zones of differential gene activity

In-silico methods for genetic finemapping in inbred mice

Standardise summary statistics from GWAS

Analysis of Error-Corrected Sequencing Data for Mutation Detection

R package for RIVER (RNA-Informed Variant Effect on Regulation)

A suite for analysis of rare genomic variants in whole genome sequencing data

Replicate oriented Visualization of a genomic region

SNP Effect Matrix Pipeline in R

Somatic Signatures

TVTB: The VCF Tool Box

Yet Another Package for Signature Analysis

Prediction of intronic splicing branchpoints

Gene set analysis methods for SNP association p-values that lie in genes in given gene sets

Decomposition of individual tumors into mutational signatures by signature refitting

Efficient Gene Set Enrichment Analysis for DNA Methylation Data

Identification of candidate genes associated with genetic variation

Seamless visualization of complex genomic variations in GMOs and edited cell lines

An integrated analysis package of Gene expression and Copy number alteration

Infer Copy Number Variation from Single-Cell RNA-Seq Data

IPD IMGT/HLA and IPD KIR database for Homo sapiens

Retrieves Condition-Specific Variants in RNA-Seq Data

Analysing Illumina HumanMethylation BeadChip Data

Preprocessing and Analysis of Deep Mutational Scanning Data

Accesses MyVariant.info variant query and annotation services

CNV detection tool for targeted NGS panel data

Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection

R wrapper for Progenetix

R interface to the IGVF Catalog

scQTLtools: an R/Bioconductor package for comprehensive identification and visualization of single-cell eQTLs

Get inversion status in predefined regions

Semi-Supervised Mixture Model

High Throughput Sequencing Cell Authentication Toolkit

Empirical Bayesian approach to mutational signature discovery

Transcriptome Analysis of Differential Allelic Representation

Modify a set of reference sequences using a set of variants

Wavelet-based Feature Extraction for Copy-number Alteration Data