tadar
Bioc currentTranscriptome Analysis of Differential Allelic Representation
Release Lineage
Entered 3.18 · Oct 25, 2023
Current · Requires R 4.6
Description
This package provides functions to standardise the analysis of Differential Allelic Representation (DAR). DAR compromises the integrity of Differential Expression analysis results as it can bias expression, influencing the classification of genes (or transcripts) as being differentially expressed. DAR analysis results in an easy-to-interpret value between 0 and 1 for each genetic feature of interest, where 0 represents identical allelic representation and 1 represents complete diversity. This metric can be used to identify features prone to false-positive calls in Differential Expression analysis, and can be leveraged with statistical methods to alleviate the impact of such artefacts on RNA-seq data.
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Topics
People
- Lachlan Baer author maintainer
- Stevie Pederson author