Bioconductor Packages

Example data for MEDIPS and QSEA packages

Example ChIP-Seq data for the MMDiff package

Data package for Multi-Omics Factor Analysis (MOFA)

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Datasets for benchmarking in microbiome research

Experimental Data for MutSeqR Examples

Nanopore RNA-Seq Example data

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Data for NxtIRF

Promoter Capture Hi-C data

expression and copy number data on clear cell renal carcinoma samples

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Data package for phylogenetic profile analysis using PhyloProfile tool

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Companion data package for the ReactomeGSA package

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Example SpatialFeatureExperiment datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

An example dataset for use with the SVM2CRM package

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics

Integrating Multi-modal Single Cell Experiment datasets

An example cancer whole genome sequencing data for the SomatiCA package

Somatic Cancer Alterations

Collection of spatial omics datasets

The Cancer Genome Atlas Illumina 450k methylation example data

Experiment data for the TENET package

Visium spatial gene expression data by 10X Genomics

Timer Quantification

A collection of trans-omics datasets across various biological systems

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

EBI/PSB cross-hybridisation study package

Affymetrix Data for Demonstration Purpose

Normal colon and cancer preprocessed affy data for antiProfile building.

ARACNe-inferred gene networks from TCGA tumor datasets

Human B-cell transcriptional interactome and normal human B-cell expression data

Data Package for Biscuiteer

Strand-seq data for demonstration purposes

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Example whole genome bisulfite data for the bsseq package

A harmonized data resource and software for enrichment analysis of microbial physiologies

ExperimentHub data for the cfTools package

Data used in the vignette of the cnvGSA package

exprSet for Alon et al. (1999) colon cancer data

Curated breast cancer gene expression data with survival and treatment information

Curated Metagenomic Data of the Human Microbiome

Curated Prostate Cancer Data