Bioconductor Packages

Analysis of Microbiome Differential Abundance by Pooling Tobit Models

Adaptive Dropout Imputer (ADImpute)

Agreement of Differential Expression Analysis

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

AnaLysis routines for ePigenomicS data

Affinity Network Fusion for Complex Patient Clustering

Analysis of alternative poly A site usage

Association Plots

Ancestry Specific Allele Frequency Estimation

ASCETIC

Predict Acetylated Lysine Sites

Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

Automatic Statistical Identification in Complex Spectra

An R package for subset-based association analysis of heterogeneous traits and subtypes

Adaptive Signature Selection and InteGratioN (ASSIGN)

Functional annotation-driven unsupervised clustering for single-cell data

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Analysis of Alternative Splicing Using RNA-Seq

Analysis Tools for scATACseq Data with CoGAPS

ATAC-seq Quality Control

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)

Attribute-Weighted Aggregation

An R package for fast computing for adaptively weighted fisher's method

visualization and annotation of isotopic enrichment patterns of peptides and metabolites with stable isotope labeling from proteomics and metabolomics

A Functional Approach To Impute Genetically Regulated Expression

Investigates Allele Specific Expression

Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

Accessing AlphaMissense Data Resources in R

Automated spectraL Processing System for NMR

Statistical analysis of sequins

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

ArrayExpress High Throughput Sequencing Processing Pipeline

geneChip Analysis Package

Assess Gene Predictions Using Proteomics and Evolutionary Conservation

Automated parameter selection for untargeted metabolomics data processing

Bayesian Analysis of Differential Expression in RNA Sequencing Data

A Bayesian Approach for Geneset Selection

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

Barcode Analysis using linear models

Meta-analysis for the metagenomic read counts data from different cohorts

BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)

BEAT - BS-Seq Epimutation Analysis Toolkit

Correction of batch effects in DNA methylation data