Bioconductor Packages

CytoBands for AnnotationHub

EnsDbs for AnnotationHub

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account

Affinity Network Fusion for Complex Patient Clustering

Analysis of alternative poly A site usage

A toolkit for APA analysis using RNA-seq data

Association Plots

Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models

Automatic Statistical Identification in Complex Spectra

An R package for subset-based association analysis of heterogeneous traits and subtypes

Adaptive Signature Selection and InteGratioN (ASSIGN)

Functional annotation-driven unsupervised clustering for single-cell data

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Analysis of Alternative Splicing Using RNA-Seq

Analysis Tools for scATACseq Data with CoGAPS

Attribute-Weighted Aggregation

An R package for fast computing for adaptively weighted fisher's method

A Functional Approach To Impute Genetically Regulated Expression

Affymetrix GeneChip software compatibility

Investigates Allele Specific Expression

Automated spectraL Processing System for NMR

Create an ALTREP object by defining ALTREP functions in R

Bioconductor on the AnVIL compute environment

R / Bioconductor Support for the AnVIL Azure Platform

Generic functions for interacting with the AnVIL ecosystem

Provide functions to retrieve and report on usage expenses in NHGRI AnVIL (anvilproject.org).

The GCP R Client for the AnVIL

Publish Packages and Other Resources to AnVIL Workspaces

Expose the vrs_anvil_toolkit Python package via R

Run workflows implemented in Terra/AnVIL workspace

A framework for sharing interactive data and plots from R through the web

Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Facilities for Filtering Bioconductor Annotation Resources

Tools for building SQLite-based annotation data packages

Client to access AnnotationHub resources

Transform public data resources into Bioconductor Data Structures

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

geneChip Analysis Package

Gene Expression Atlas query and gene set enrichment package.

A Bayesian Approach for Geneset Selection

BANDITS: Bayesian ANalysis of DIfferenTial Splicing

Bayesian Analysis of Single-Cell Sequencing data

Stan implementation of BASiCS

Meta-analysis for the metagenomic read counts data from different cohorts

BEARscc (Bayesian ERCC Assesstment of Robustness of Single Cell Clusters)