Bioconductor Packages

CGHbase: Base functions and classes for arrayCGH data analysis.

CNE Detection and Visualization

Identifies false positives of CNV calling tools by using SNV calls

COexpression Tables ANalysis

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Package for CTDbase data query, visualization and downstream analysis

Data companion to CTexploreR

Explores Cancer Testis Genes

A mass spectrometry imaging toolbox for statistical analysis

Read and write mass spectrometry imaging files

Construct Benchmarks for Single Cell Analysis Methods

Reconstruction, visualization and analysis of branching trajectories

Quantitative comparison of multiple ChIP-seq datasets

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Simulation of ChIP-seq experiments

R interface to a subset of OpenBabel functionalities

Cheminformatics Toolkit for R

Infrastructure for Chromatographic Mass Spectrometry Data

Simulation of Tumor Clonal Evolution with Realistic Sequencing Noise

An Investigation Across Different Species and Tissues

Create Copy-Number Plots using karyoploteR functionality

Tools for counting and visualising mutations in a target location

Queries the Human Cell Atlas

A GatingML Interface for Cross Platform Cytometry Data Sharing

GUI's for visualization of flow cytometry data analysis pipelines

Tools for the Differential Analysis of Proteins Abundance with R

Tools for curating, analyzing, and manipulating biological sequences

A `DataFrame` (`S4Vectors`) backend for `dplyr`

Methylation array and sequencing spatial analysis methods

Differential Network Enrichment Analysis for Biological Data

DeeDeeExperiment: An S4 Class for managing and exploring omics analysis results

DegNorm: degradation normalization for RNA-seq data

A unified framework for working transparently with on-disk and in-memory array-like datasets

Delayed operation on DataFrame using standard DataFrame metaphor

Functions that Apply to Rows and Columns of 'DelayedMatrix' Objects

Delayed Arrays of Random Values

R package for sparse and out-of-core arithmetic and decomposition of Tensor

Interactive Workflow for Discovering Rhythmicity in Biological Data

A DownStream Chemo-Proteomics Analysis Pipeline

Utilities for Handling Single-Cell Droplet Data

Estimating Absolute Abundance from Microbial Spike-in Controls

Dynamic document tools

Quality control and analysis tools for Illumina DNA methylation BeadChip

Provides access to pathogen annotation resources available on EuPathDB databases

Client to access ExperimentHub resources

Add resources to ExperimentHub

Manages subsets of data with Bioconductor Experiment objects

FLAMES: Full Length Analysis of Mutations and Splicing in long read RNA-seq data

A Bioconductor package for accessing GA4GH API data servers

Shiny application for interacting with GA4GH-based data servers