Bioconductor Packages

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

A set of annotation maps describing the entire Human Disease Ontology

A set of annotation maps describing the entire Human Phenotype Ontology

HiBED

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

ITALICSData

Data package for JASPAR 2018

Data package for JASPAR database (version 2020)

Data package for JASPAR database (version 2022)

Data package for JASPAR database (version 2024)

Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024

Disease Datasets from GEO

KEGG Disease Datasets from GEO

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

LowMACAAnnotation

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

Reads from Two Lung Cancer Cell Lines

M3Drop Example Data

Experimental Data Package: MAQCsubset

Example data for MEDIPS and QSEA packages

Example ChIP-Seq data for the MMDiff package

A set of annotation maps describing the Mouse Phenotype Ontology

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Experimental Data for MutSeqR Examples

Data for the NCIgraph software package

Nanopore RNA-Seq Example data

Data required for getting the gene set scores with NetActivity package

Data for NxtIRF

Supporting data for package OMICsPCA

Ob/ob Mice Data on Normal and High Fat Diet

Orthology mapping package

Promoter Capture Hi-C data

Probe-level Expression Change Averaging

expression and copy number data on clear cell renal carcinoma samples

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Experimental data for the PathNet package

SELDI-TOF data of Breast cancer samples

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Companion data package for the ReactomeGSA package

Supporting datasets for SBGNview package

Example SpatialFeatureExperiment datasets

A bioconductor package for sample quality check with next generation sequencing data

SimBenchData: a collection of 35 single-cell RNA-seq data covering a wide range of data characteristics