Bioconductor Packages

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

Genomic coordinates of CTCF binding sites, with orientation

A set of annotation maps describing the entire Disease Ontology

A set of annotation maps describing the entire Gene Ontology

A set of annotation maps describing the entire Human Disease Ontology

A set of annotation maps describing the entire Human Phenotype Ontology

Data package for JASPAR 2018

Data package for JASPAR database (version 2020)

Data package for JASPAR database (version 2022)

Data package for JASPAR database (version 2024)

LowMACAAnnotation

A set of annotation maps describing the Mouse Phenotype Ontology

Orthology mapping package

Probe-level Expression Change Averaging

Transcriptome instability analysis

Using Bioconductor for Microarray Analysis

Analysis of SUrvival and RIsk prediction in patients based on gene signatures

Genomic coordinates of problematic genomic regions

A plyranges and tximeta workflow

Input data for the geneplast package

Global Test for Counts

Anotation package for Hipathia package

A data package containing annotation data for humanCHRLOC

Changing genomic coordinate systems with rtracklayer::liftOver

Linear Models for Microarray and Omics Data

Tools for conducting enrichment analysis of MeSH

Mapping of Metabolite IDs from Different Sources

A data package containing annotation data for mouseCHRLOC

Preprocessing tools for oligonucleotide arrays

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)

Demonstration Data from rGenomeTracks Package

A data package containing annotation data for ratCHRLOC

A set of annotation maps for reactome

L1-regularization based methods for detection of differential splicing

Rotation based gene set analysis

Pretrained models for scAnnotatR package

Seqpac: A Framework for smallRNA analysis in R using Sequence-Based Counts

Introduction to Bioconductor for Sequence Data

Multiple Testing using SAM and Efron's Empirical Bayes Approaches

Supervised Normalization of Microarrays

AnnotationData for Synaptome.DB package

Synamptosome Proteome Database