Bioconductor Packages

Probe-level Expression Change Averaging

expression and copy number data on clear cell renal carcinoma samples

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Experimental data for the PathNet package

SELDI-TOF data of Breast cancer samples

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Supporting datasets for SBGNview package

A bioconductor package for sample quality check with next generation sequencing data

Integrating Multi-modal Single Cell Experiment datasets

Somatic Cancer Alterations

Transcriptome instability analysis

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

Data for the VariantTools tutorial

Whole Exome Sequencing (WES) of chromosome 22 401st to 500th exon from the 1000 Genomes (1KG) Project by the Washington University Genome Sequencing Center (WUGSC).

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014

Analysis of SUrvival and RIsk prediction in patients based on gene signatures

Data for testing of the package blima.

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Connectivity Map (version 2) Data

cn.mops - Mixture of Poissons for CNV detection in NGS data

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Curated breast cancer gene expression data with survival and treatment information

Curated Prostate Cancer Data

Curation of existing tuberculosis transcriptomic studies

Cancer Dependency Map Data Package

Example data for the dyebias package, which implements the GASSCO method.

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

Genomic coordinates of problematic genomic regions

Illumina DASL example microarray data

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.

Auxillary data for gage package

Input data for the geneplast package

Experimental data for showing functionalities of the genomation package

Global Test for Counts

Sample data - Hapmap 100K HIND Affymetrix

Sample data - Hapmap 100K XBA Affymetrix

Sample data - Hapmap 500K NSP Affymetrix

Sample data - Hapmap 500K STY Affymetrix

Sample data - Hapmap SNP 5.0 Affymetrix

Sample data - Hapmap SNP 6.0 Affymetrix

Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

CellScore Standard Cell Types Expression Dataset [hgu133plus2]

Unknown annotation data (chip hguDKFZ31)