Bioconductor Packages

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Basic peak calling on STARR-seq data

Batch Effects Quality Control Software

BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Bias-free Footprint Enrichment Test

Binding site defintion based on iCLIP data

Functional Similarities

Model-View-Controller (MVC) Classes That Use Biobase

Biological Network Reconstruction Omnibus

Routines for the functional analysis of biological networks

Detect tissue heterogeneity in expression profiles with gene sets

Biobase: Base functions for Bioconductor

Read and write GFF and GTF files

Programmatic Access to the Azul API

Utility and internal functions for Bioconductor packages

Write, containerize, publish and version Quarto books with Bioconductor

Functions to process a bioconductor build report database

Bioconductor-specific package checks

Illustration of FHIR ingestion and transformation using R

Manage Files Across Sessions

S4 generic functions used in Bioconductor

basilisk and hail

View Bioconductor Package Maintainer Information Interactively

Bioconductor facilities for parallel evaluation

An interactive Shiny dashboard for Bioconductor package maintainers

Collection of simple tools for learning about Bioconductor Packages

interface to python sklearn via Rstudio reticulate

Set the appropriate version of Bioconductor packages

Efficient manipulation of biological strings

A matrix data storage object held in temporary files

Microarray Data related methods that utlize BufferedMatrix objects

Infer Ligand-Receptor Interactions from bulk expression (transcriptomics/proteomics) data, or spatial transcriptomics

Bumpy Matrix of Non-Scalar Objects

Category encoding method for selecting feature genes for the classification of single-cell RNA-seq

Chromosmal Aberrations Finder in Expression data

Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Cytometry dATa anALYSis Tools

plot bayesian network inferred from gene expression data based on enrichment analysis results

Case Control Allele Frequency Estimation

Co-expression Modules identification Tool

CGHbase: Base functions and classes for arrayCGH data analysis.

CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution

A normalization method for Copy Number Aberration in cancer samples

CNE Detection and Visualization

Integration of CellNOptR to add missing links

Copy Number Variant Metrics