Bioconductor Packages

4,656 packages in the Bioconductor catalogue.

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4,656

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3,810

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846

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5

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All (4,656) Software (2,418) Annotation (928) Experiment (436) Workflows (28)

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CustomArray2 SequenceAnnotation5 AnnotationWorkflow4 BasicWorkflow5 EpigeneticsWorkflow6

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Showing 1–26 of 26 packages

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Package	Category	Version	First Release	Last Release	Status
BiocMetaWorkflow Bioc BioC Workflow about publishing a Bioc Workflow		1.30.0	3.7	3.21	removed
CAGEWorkflow Bioc A step-by-step guide to analyzing CAGE data using R/Bioconductor	workflows	1.28.0	3.9	3.23	current
CTCF Bioc Genomic coordinates of CTCF binding sites, with orientation	annotation	0.99.14	3.15	3.23	current
CopyhelpeR Bioc Helper files for CopywriteR	experiment	1.44.0	3.1	3.23	current
LongMod123 Bioc Long-read methylation data analysis with NanoMethViz and Bioconductor		0.99.0			removed
LymphoSeqDB Bioc LymphoSeq annotation databases	annotation	0.99.2		3.23	current
MotIV Bioc Motif Identification and Validation		1.46.0	2.6	3.12	removed
OMICsPCA Bioc An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples	software	1.30.0	3.8	3.23	current
TENET.AnnotationHub Bioc Annotation data for the TENET package	annotation	1.1.0	3.20	3.23	current
annotation Bioc Genomic Annotation Resources	workflows	1.36.0	2.12	3.23	current
arrays Bioc Using Bioconductor for Microarray Analysis	workflows	1.38.0	2.12	3.23	current
chipseqDB Bioc A Bioconductor Workflow to Detect Differential Binding in ChIP-seq Data	workflows	1.36.0	3.2	3.23	current
csawBook Bioc The Book of csaw		1.20.0	3.13	3.23	removed
csawUsersGuide Bioc csaw User's Guide	workflows	1.28.0	3.9	3.23	current
denyranges Bioc Genomic coordinates of problematic genomic regions		0.99.1			removed
excluderanges Bioc Genomic coordinates of problematic genomic regions	annotation	0.99.11	3.15	3.23	current
fluentGenomics Bioc A plyranges and tximeta workflow	workflows	1.24.0	3.11	3.23	current
generegulation Bioc Finding Candidate Binding Sites for Known Transcription Factors via Sequence Matching	workflows	1.36.0	2.12	3.23	current
hguDKFZ31.db Bioc Unknown annotation data (chip hguDKFZ31)	annotation	3.2.3		3.23	current
hgubeta7.db Bioc Unknown annotation data (chip hgubeta7)	annotation	3.2.3		3.23	current
liftOver Bioc Changing genomic coordinate systems with rtracklayer::liftOver	workflows	1.36.0	3.0	3.23	current
methylationArrayAnalysis Bioc A cross-package Bioconductor workflow for analysing methylation array data	workflows	1.36.0			current
proactivWorkflow Bioc Identifying active and alternative promoters from RNA-seq data with proActiv		0.99.0			removed
seqpac Bioc Seqpac: A Framework for smallRNA analysis in R using Sequence-Based Counts	workflows	1.12.0	3.17	3.23	current
sequencing Bioc Introduction to Bioconductor for Sequence Data	workflows	1.36.0	2.12	3.23	current
variants Bioc Annotating Genomic Variants	workflows	1.36.0	2.12	3.23	current