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annotation

Bioc current

Genomic Annotation Resources

v1.36.0 · workflows · Artistic-2.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 2.12 · Apr 4, 2013

Current · Requires R 4.6

1.0 In 27 of 49 releases 3.23

Description

Annotation resources make up a significant proportion of the Bioconductor project. And there are also a diverse set of online resources available which are accessed using specific packages. This walkthrough will describe the most popular of these resources and give some high level examples on how to use them.

Code

Structure

Lines of code

1,277

Files

5

Compiled share

0%

Has compiled src

No

Language breakdown

Vignettes 1,277 (100%)

API

Exported functions

–

Internal functions

0

Testing & CI

Has tests

No

Test-to-code ratio

–

testthat edition

–

CI present

No

CI type

[]

PR gated

No

Docs

Return-value doc rate

–

\dontrun example ratio

–

Roxygen coverage

–

Has pkgdown

No

NEWS present

No

Health & Security signals

Informational signals; not verdicts.

on.exit coverage

–

Unsafe pattern score

0

Dep constraint coverage

0%

Secret pattern count

0

Bundled 3rd-party code

2 items

Portability & License

Min R version

3.3.0

System requirements

–

C++ standard

–

License

Artistic-2.0

License flags

SPDX valid, OSI approved

History

Versions

27

First release

2013-07-29

Latest release

2026-04-28

Avg cadence

183 days

Cold removal rate

–

Dep drift

15

LOC over versions

v3.6: 1,400 LOCv3.7: 1,441 LOCv3.8: 1,441 LOCv3.9: 1,441 LOCv3.10: 1,441 LOCv3.11: 1,441 LOCv3.12: 1,441 LOCv3.13: 1,441 LOCv3.14: 1,441 LOCv3.15: 1,441 LOCv3.16: 1,451 LOCv3.17: 1,454 LOCv3.18: 1,454 LOCv3.19: 1,454 LOCv3.20: 1,454 LOCv3.21: 1,454 LOCv3.22: 1,454 LOCv3.23: 1,277 LOC

Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.

Topics

Workflow › AnnotationWorkflow
Workflow

People