Bioconductor Packages

Bayesian Piecewise Constant Regression for DNA copy number estimation

Secondary analyses of CNV data (HRD and more)

CNV detection tool for targeted NGS panel data

Infer locally aneuploid cells using single cell RNA-seq data

Integrative Pathway Analysis with Modern PCA Methodology and Gene Selection

R wrapper for Progenetix

IP-seq data analysis and vizualization

Quantile smoothing and genomic visualization of array data

rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines

Association analysis of genomic regions based on permutation tests

RegioneReloaded: Multiple Association for Genomic Region Sets

Assessment of evidence for LOH in spatial transcriptomics pre-processed data using Bayes factor calculations

Wavelet-based Feature Extraction for Copy-number Alteration Data