octad.db
Bioc currentOpen Cancer TherApeutic Discovery (OCTAD) database
Release Lineage
Entered 3.16 · Nov 2, 2022
Current · Requires R 4.6
Description
Open Cancer TherApeutic Discovery (OCTAD) package implies sRGES approach for the drug discovery. The essential idea is to identify drugs that reverse the gene expression signature of a disease by tamping down over-expressed genes and stimulating weakly expressed ones. The following package contains all required precomputed data for whole OCTAD pipeline computation.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
4 1 exported
Complexity
1.5 avg / 3 max
Call network
4 nodes / 2 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
199
Files
18
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
3
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
50%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.2.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
8
First release
2022-11-01
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 50%
Topics
Depended on by (1)
Bioconductor (1)
People
- E. Chekalin author maintainer
- B. Chen author
- B. Glicksberg contributor
- D. Joseph contributor
- K. Liu contributor
- P. Newbury contributor
- S. Paithankar author
- A. Wen contributor
- J. Xing contributor
- B. Zeng author