Skip to content

msigdb

Bioc current

An ExperimentHub Package for the Molecular Signatures Database (MSigDB)

v1.20.0 · experiment · CC BY 4.0
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.13 · May 20, 2021

Current · Requires R 4.6

1.0 In 11 of 49 releases 3.23

Description

This package provides the Molecular Signatures Database (MSigDB) in a R accessible objects. Signatures are stored in GeneSet class objects form the GSEABase package and the entire database is stored in a GeneSetCollection object. These data are then hosted on the ExperimentHub. Data used in this package was obtained from the MSigDB of the Broad Institute. Metadata for each gene set is stored along with the gene set in the GeneSet class object.

Code & tests

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

ExperimentData › PackageTypeData › ExperimentHub
ExperimentData › OrganismData › Homo_sapiens_Data
ExperimentData › OrganismData › Mus_musculus_Data

Depended on by (6)

Bioconductor (6)

epiregulon.extra escape mastR postNet singIST vissE

People