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metagene

Bioc removed

A package to produce metagene plots

v2.36.0 · Artistic-2.0 | file LICENSE
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Release Lineage

Entered 3.0 · Oct 14, 2014

Removed after 3.19 · May 1, 2024

1.0 In 20 of 49 releases 3.23

Description

This package produces metagene plots to compare the behavior of DNA-interacting proteins at selected groups of genes/features. Bam files are used to increase the resolution. Multiple combination of group of bam files and/or group of genomic regions can be compared in a single analysis. Bootstraping analysis is used to compare the groups and locate regions with statistically different enrichment profiles.

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Topics

Software › Technology › Sequencing › ChIPSeq
Software › ResearchField › Genetics
Software › WorkflowStep › MultipleComparison
Software › BiologicalQuestion › Coverage
Software › WorkflowStep › Alignment
Software › Technology › Sequencing

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Bioconductor (1)

Imetagene

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