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TCGAutils

Bioc current

TCGA utility functions for data management

v1.32.2 · software · Artistic-2.0
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Release Lineage

Entered 3.7 · May 1, 2018

Current · Requires R 4.6

1.0 In 17 of 49 releases 3.23

Description

A suite of helper functions for checking and manipulating TCGA data including data obtained from the curatedTCGAData experiment package. These functions aim to simplify and make working with TCGA data more manageable. Exported functions include those that import data from flat files into Bioconductor objects, convert row annotations, and identifier translation via the GDC API.

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Topics

Software
Software › WorkflowStep
Software › WorkflowStep › Preprocessing
Software › Infrastructure › DataImport

Depended on by (9)

Bioconductor (9)

cBioPortalData CNVRanger glmSparseNet imageFeatureTCGA RTCGAToolbox terraTCGAdata curatedTCGAData dce IntOMICS

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