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RaggedExperiment

Bioc current

Representation of Sparse Experiments and Assays Across Samples

v1.36.0 · software · Artistic-2.0
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Release Lineage

Entered 3.5 · Apr 25, 2017

Current · Requires R 4.6

1.0 In 19 of 49 releases 3.23

Description

This package provides a flexible representation of copy number, mutation, and other data that fit into the ragged array schema for genomic location data. The basic representation of such data provides a rectangular flat table interface to the user with range information in the rows and samples/specimen in the columns. The RaggedExperiment class derives from a GRangesList representation and provides a semblance of a rectangular dataset.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Infrastructure
Software › Infrastructure › DataRepresentation

Depended on by (16)

Bioconductor (16)

cBioPortalData CNVRanger maftools MultiAssayExperiment MultiDataSet omicsPrint RTCGAToolbox TCGAutils TENxIO terraTCGAdata curatedPCaData curatedTCGAData SingleCellMultiModal compartmap SARC TxRegInfra

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