Skip to content

StructuralVariantAnnotation

Bioc current

Variant annotations for structural variants

v1.28.0 · software · GPL-3 + file LICENSE
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.9 · May 3, 2019

Current · Requires R 4.6

1.0 In 15 of 49 releases 3.23

Description

StructuralVariantAnnotation provides a framework for analysis of structural variants within the Bioconductor ecosystem. This package contains contains useful helper functions for dealing with structural variants in VCF format. The packages contains functions for parsing VCFs from a number of popular callers as well as functions for dealing with breakpoints involving two separate genomic loci encoded as GRanges objects.

Code & tests

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Infrastructure › DataImport
Software › Technology › Sequencing
Software › WorkflowStep › Annotation
Software › ResearchField › Genetics
Software › BiologicalQuestion › VariantAnnotation

Depended on by (5)

Bioconductor (5)

shiny.gosling svaNUMT svaRetro NUMTDetect RTDetect

People