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RegionalST

Bioc current

Investigating regions of interest and performing regional cell type-specific analysis with spatial transcriptomics data

v1.10.0 · software · GPL-3
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Release Lineage

Entered 3.18 · Oct 25, 2023

Current · Requires R 4.6

1.0 In 6 of 49 releases 3.23

Description

This package analyze spatial transcriptomics data through cross-regional cell type-specific analysis. It selects regions of interest (ROIs) and identifys cross-regional cell type-specific differential signals. The ROIs can be selected using automatic algorithm or through manual selection. It facilitates manual selection of ROIs using a shiny application.

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Topics

Software › Technology › Spatial
Software › ResearchField › Transcriptomics
Software › WorkflowStep › Pathways › Reactome
Software › WorkflowStep › Pathways › KEGG

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