OrganismDbi
Bioc currentSoftware to enable the smooth interfacing of different database packages
Release Lineage
Entered 2.10 · Apr 2, 2012
Current · Requires R 4.6
Description
The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
73 4 exported
Complexity
2 avg / 10 max
Call network
73 nodes / 85 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,531
Files
33
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
69
Testing & CI
Has tests
Yes
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
26.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
2.14.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
29
First release
2012-03-30
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
20
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 71%
- Documented parameters
- 100%
- Return-value docs
- 83%
- References docs
- 0%
Topics
Depended on by (11)
People
- Bioconductor Package Maintainer maintainer
- Aliyu Atiku Mustapha contributor
- Marc Carlson author
- Martin Morgan author
- Valerie Obenchain author