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CINdex

Bioc removed

Chromosome Instability Index

v1.38.0 · GPL (>= 2)
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Release Lineage

Entered 3.3 · May 4, 2016

Removed after 3.22 · Oct 30, 2025

1.0 In 20 of 49 releases 3.23

Description

The CINdex package addresses important area of high-throughput genomic analysis. It allows the automated processing and analysis of the experimental DNA copy number data generated by Affymetrix SNP 6.0 arrays or similar high throughput technologies. It calculates the chromosome instability (CIN) index that allows to quantitatively characterize genome-wide DNA copy number alterations as a measure of chromosomal instability. This package calculates not only overall genomic instability, but also instability in terms of copy number gains and losses separately at the chromosome and cytoband level.

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Topics

Software
Software › AssayDomain › CopyNumberVariation
Software › BiologicalQuestion › GenomicVariation
Software › AssayDomain › aCGH
Software › Technology › Microarray
Software › ResearchField › Genetics
Software › Technology › Sequencing

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