Ludwig Geistlinger

Bioconductor Packages

20 packages

Package	Title	Category	Version
BioPlex Bioc	R-side access to BioPlex protein-protein interaction data	experiment	1.18.0
CNVRanger Bioc	Summarization and expression/phenotype association of CNV ranges	software	1.28.0
EDASeq Bioc	Exploratory Data Analysis and Normalization for RNA-Seq	software	2.46.0
EnrichmentBrowser Bioc	Seamless navigation through combined results of set-based and network-based enrichment analysis	software	2.42.0
GSEABenchmarkeR Bioc	Reproducible GSEA Benchmarking	software	1.32.0
HMP16SData Bioc	16S rRNA Sequencing Data from the Human Microbiome Project	experiment	1.32.0
Macarron Bioc	Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets	software	1.16.0
MerfishData Bioc	Collection of public MERFISH datasets	experiment	1.14.1
MouseAgingData Bioc	Multi-omics data access for studies investigating the effects of aging	experiment	1.8.0
OSCA.advanced Bioc removed	Advanced Single-Cell Analysis		1.20.0
OSCA.intro Bioc removed	Introduction to OSCA		1.20.0
ProteinGymR Bioc	Programmatic access to ProteinGym datasets in R/Bioconductor	experiment	1.6.0
RTCGAToolbox Bioc	A new tool for exporting TCGA Firehose data	software	2.42.0
SingleCellMultiModal Bioc	Integrating Multi-modal Single Cell Experiment datasets	experiment	1.24.0
bugsigdbr Bioc	R-side access to published microbial signatures from BugSigDB	software	1.18.0
consensusOV Bioc	Gene expression-based subtype classification for high-grade serous ovarian cancer	software	1.34.0
curatedTCGAData Bioc	Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects	experiment	1.34.0
lefser Bioc	R implementation of the LEfSE method for microbiome biomarker discovery	software	1.22.0
scConform Bioc	Conformal Inference for Cell Type Annotation	software	1.0.0
scDiagnostics Bioc	Cell type annotation diagnostics	software	1.6.1