h3sdm

0.1.7

Species Distribution Modeling with H3 Grids

0packages depend

1.7Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Manuel SpínolaFirst published 2026-04-158 releasesCRAN page ↗GitHub ↗

Provides tools for species distribution modeling using H3 hexagonal grids (Uber Technologies Inc., 2022, https://h3geo.org). Facilitates retrieval of species occurrence records, generation of H3 grids, computation of landscape metrics, and preparation of spatial data for modern species distribution models workflows. Designed for biodiversity and landscape ecology research.

Install

R (CRAN)pak (dev)Ubuntu (r2u)

install.packages("h3sdm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ManuelSpinola/h3sdm")

Development version from ManuelSpinola/h3sdm. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-h3sdm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 8.6 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-22
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-20
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-16
3 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 230 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 21%
Documented parameters: 100%
Return-value docs: 100%
References docs: 6%

Downloads

1.7K

CRAN downloads in the past year

Rank #6,633 · ~5/day · ~139/mo

Releases R versions

Daily download trend is not available in this view yet.

30330 days

1.5K90 days

1.7K1 year

Compare downloads with other packages →

Also on43 r2u

Repository

GitHub ↗ manuelspinola/h3sdm

8Stars

0Forks

1Open issues

0Open PRs

0Releases

103Commits

2Contributors

103 commits · Last activity 2026-07-05

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/manuelspinola/h3sdm on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

39 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (23)

statssf dplyr purrr tibble rlang terra spatialsample recipes rsample tune workflows yardstick ecospat DALEX stacks h3jsr landscapemetrics rbiodatacr spocc exactextractr tidyr cli

LinkingTo (0)

none

Suggests (17)

ggplot2 paisaje knitr rmarkdown here themis DALEXtra ingredients tidyterra tidymodels workflowsets ranger xgboost ggbrick parsnip tidyverse geodata

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Manuel Spínola

Author, Maintainer

Authors (1)

Manuel Spínola

Author, Maintainer

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

0.1.7Latest
2026-07-06 · current release · diff ↗
0.1.6
2026-06-15 · diff ↗
0.1.5
2026-06-13 · diff ↗
0.1.4
2026-05-30 · diff ↗
0.1.3
2026-05-29 · diff ↗
0.1.2
2026-05-23 · diff ↗
0.1.1
2026-05-13 · diff ↗
R
R 4.6.0 released · 2026-04-24
0.1.0
2026-04-15
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-04-15
Total releases: 8 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1
Bundled data: 874 KB / 3 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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