PKbioanalysis

0.5.0

Pharmacokinetic Bioanalysis Experiments Design and Exploration

0packages depend

4.9Kdownloads / year

32.7%test coverage

10/13checks pass

Overview

About

Maintained by Omar ElashkarFirst published 2024-09-185 releasesCRAN page ↗GitHub ↗

Automate pharmacokinetic/pharmacodynamic bioanalytical procedures based on best practices and regulatory recommendations. The package impose regulatory constrains and sanity checking for common bioanalytical procedures. Additionally, 'PKbioanalysis' provides a relational infrastructure for plate management and injection sequence.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("PKbioanalysis", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("OmarAshkar/PKbioanalysis")

Development version from OmarAshkar/PKbioanalysis. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pkbioanalysis

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-PKbioanalysis

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PKbioanalysis

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1ERROR2NOTE10OK

Failing flavors

NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
ERROR r-release-macos-x86_64

Slowest check: 9.8 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.12

32.7%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

ERROR2026-04-25
9 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 830 wordsVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 60%
Documented parameters: 100%
Return-value docs: 59%
References docs: 0%

Downloads

4.9K

CRAN downloads in the past year

Rank #17,268 · ~13/day · ~407/mo

Releases R versions

Daily download trend is not available in this view yet.

19430 days

67490 days

4.9K1 year

Compare downloads with other packages →

Also on127 r2u38 autocran

Repository

GitHub ↗ omarashkar/pkbioanalysis

1Stars

0Forks

20Open issues

0Open PRs

0Releases

136Commits

1Contributors

License AGPL-3.0 · 136 commits · Last activity 2026-06-23

Stars over time

2026-07-09 · 02026-07-10 · 1

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/omarashkar/pkbioanalysis on 2026-07-19.

Continuous integration (1)

GitHub Actions

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

52 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.3.0

Imports (52)

dplyr tidyselect stringr ggplot2 ggforce (>= 0.4.1)tidyr glue checkmate shiny DBI duckdb bslib bsicons cli DiagrammeR DT shinyWidgets shinyjs unitsstatsshinyalert htmltools rlanggrDevicesutilsyaml rhandsontablemethodsreticulate RTMB janitor tibble xml2 RaMS data.tree nloptr forcats ggiraph gt plotly pracma reactable gtools ellmer htmlwidgets jsonlitenlmescales shinychat uuid sortable writexl

LinkingTo (0)

none

Suggests (5)

rxode2 knitr patchwork rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 20,474 (91%)Rd 1,980 (9%)

Code characteristics

Object systems

S36S4 class6S4 generic9S4 method22

Cyclomatic complexity: 1.0 median / 29 max
Test cases: 95 / 0.12 per code line
System requirements: 1 external

Test coverage

Line coverage

33%

Expression

36.9%

Tests / Examples

32.7% / 4% ex

Functions

325 52 exported

Complexity

2.3 avg / 29 max

Call network

325 nodes / 447 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

325 functions

Function	Cyclo	Coverage
area_report.PeakRes exp	5	0%
chrom_app exp	1	0%
combine_injec_lists exp	3	0%
export_integration exp	1	0%
export_run exp	1	0%
filter_chrom exp	10	0%

People & History

People (1)

Maintainer (1)

Omar Elashkar

Author, Maintainer

Authors (1)

Omar Elashkar

Author, Maintainer

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.5.0Latest
2026-02-17 · current release · diff ↗
0.4.0
2026-01-14 · diff ↗
0.3.0
2025-05-21 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.2.0
2024-10-02 · diff ↗
0.1.0
2024-09-18
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-09-18
Total releases: 5 / 2 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 4.3.0
Download size: 1.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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