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RTMB

'R' Bindings for 'TMB'

v1.8 · Oct 13, 2025 · GPL (>= 2)
CRAN GitHub Mirror

Description

Native 'R' interface to 'TMB' (Template Model Builder) so models can be written entirely in 'R' rather than 'C++'. Automatic differentiation, to any order, is available for a rich subset of 'R' features, including linear algebra for dense and sparse matrices, complex arithmetic, Fast Fourier Transform, probability distributions and special functions. 'RTMB' provides easy access to model fitting and validation following the principles of Kristensen, K., Nielsen, A., Berg, C. W., Skaug, H., & Bell, B. M. (2016) <DOI:10.18637/jss.v070.i05> and Thygesen, U.H., Albertsen, C.M., Berg, C.W. et al. (2017) <DOI:10.1007/s10651-017-0372-4>.

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CRAN Check Status

6 ERROR
3 NOTE
5 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang ERROR
r-devel-linux-x86_64-debian-gcc ERROR
r-devel-linux-x86_64-fedora-clang ERROR
r-devel-linux-x86_64-fedora-gcc ERROR
r-devel-macos-arm64 ERROR
r-devel-windows-x86_64 ERROR
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (19 non-OK)
ERROR r-devel-linux-x86_64-debian-clang

examples

Running examples in ‘RTMB-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: OSA-residuals
> ### Title: Recursive quantile residuals
> ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa
> ###   is.array.osa is.matrix.osa
> 
> ### ** Examples
> 
> set.seed(1)
> rw <- cumsum(.5*rnorm(20))
> obs <- rpois(20, lambda=exp(rw))
> func <- function(p) {
+   obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request
+   ans <- 0
+   jump <- c(p$rw[1], diff(p$rw))
+   ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE))
+   ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE))
+   ans
+ }
> obj <- MakeADFun(func,
+                  parameters=list(rw=rep(0,20), sd=1),
+                  random="rw")
Error in advector(e2) : 
  Invalid argument to 'advector' (lost class attribute?)
Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector
Execution halted
ERROR r-devel-linux-x86_64-debian-clang

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘RTMB-advanced.rmd’ using rmarkdown

Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
    ▆
 1. └─RTMB::MakeTape(diff, numeric(5))
 2.   └─RTMB:::.MakeTape(f, x)
 3.     ├─base (local) f(x)
 4.     └─RTMB::diff.advector(x)
 5.       └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
 6.         └─RTMB::Ops.advector(...)
 7.           ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
 8.           └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building ‘RTMB-advanced.rmd’

--- re-building ‘RTMB-introduction.rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘RTMB-introduction.rmd’

SUMMARY: processing the following file failed:
  ‘RTMB-advanced.rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-devel-linux-x86_64-debian-gcc

examples

Running examples in ‘RTMB-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: OSA-residuals
> ### Title: Recursive quantile residuals
> ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa
> ###   is.array.osa is.matrix.osa
> 
> ### ** Examples
> 
> set.seed(1)
> rw <- cumsum(.5*rnorm(20))
> obs <- rpois(20, lambda=exp(rw))
> func <- function(p) {
+   obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request
+   ans <- 0
+   jump <- c(p$rw[1], diff(p$rw))
+   ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE))
+   ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE))
+   ans
+ }
> obj <- MakeADFun(func,
+                  parameters=list(rw=rep(0,20), sd=1),
+                  random="rw")
Error in advector(e2) : 
  Invalid argument to 'advector' (lost class attribute?)
Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector
Execution halted
ERROR r-devel-linux-x86_64-debian-gcc

re-building of vignette outputs

Error(s) in re-building vignettes:
  ...
--- re-building ‘RTMB-advanced.rmd’ using rmarkdown

Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
    ▆
 1. └─RTMB::MakeTape(diff, numeric(5))
 2.   └─RTMB:::.MakeTape(f, x)
 3.     ├─base (local) f(x)
 4.     └─RTMB::diff.advector(x)
 5.       └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
 6.         └─RTMB::Ops.advector(...)
 7.           ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
 8.           └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building ‘RTMB-advanced.rmd’

--- re-building ‘RTMB-introduction.rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘RTMB-introduction.rmd’

SUMMARY: processing the following file failed:
  ‘RTMB-advanced.rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-devel-linux-x86_64-fedora-clang

examples

Running examples in ‘RTMB-Ex.R’ failed
The error most likely occurred in:

> ### Name: OSA-residuals
> ### Title: Recursive quantile residuals
> ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa
> ###   is.array.osa is.matrix.osa
> 
> ### ** Examples
> 
> set.seed(1)
> rw <- cumsum(.5*rnorm(20))
> obs <- rpois(20, lambda=exp(rw))
> func <- function(p) {
+   obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request
+   ans <- 0
+   jump <- c(p$rw[1], diff(p$rw))
+   ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE))
+   ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE))
+   ans
+ }
> obj <- MakeADFun(func,
+                  parameters=list(rw=rep(0,20), sd=1),
+                  random="rw")
Error in advector(e2) : 
  Invalid argument to 'advector' (lost class attribute?)
Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector
Execution halted
ERROR r-devel-linux-x86_64-fedora-clang

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘RTMB-advanced.rmd’ using rmarkdown

Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
    ▆
 1. └─RTMB::MakeTape(diff, numeric(5))
 2.   └─RTMB:::.MakeTape(f, x)
 3.     ├─base (local) f(x)
 4.     └─RTMB::diff.advector(x)
 5.       └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
 6.         └─RTMB::Ops.advector(...)
 7.           ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
 8.           └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building ‘RTMB-advanced.rmd’

--- re-building ‘RTMB-introduction.rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘RTMB-introduction.rmd’

SUMMARY: processing the following file failed:
  ‘RTMB-advanced.rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-devel-linux-x86_64-fedora-gcc

examples

Running examples in ‘RTMB-Ex.R’ failed
The error most likely occurred in:

> ### Name: OSA-residuals
> ### Title: Recursive quantile residuals
> ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa
> ###   is.array.osa is.matrix.osa
> 
> ### ** Examples
> 
> set.seed(1)
> rw <- cumsum(.5*rnorm(20))
> obs <- rpois(20, lambda=exp(rw))
> func <- function(p) {
+   obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request
+   ans <- 0
+   jump <- c(p$rw[1], diff(p$rw))
+   ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE))
+   ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE))
+   ans
+ }
> obj <- MakeADFun(func,
+                  parameters=list(rw=rep(0,20), sd=1),
+                  random="rw")
Error in advector(e2) : 
  Invalid argument to 'advector' (lost class attribute?)
Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector
Execution halted
ERROR r-devel-linux-x86_64-fedora-gcc

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building ‘RTMB-advanced.rmd’ using rmarkdown

Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
    ▆
 1. └─RTMB::MakeTape(diff, numeric(5))
 2.   └─RTMB:::.MakeTape(f, x)
 3.     ├─base (local) f(x)
 4.     └─RTMB::diff.advector(x)
 5.       └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
 6.         └─RTMB::Ops.advector(...)
 7.           ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
 8.           └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building ‘RTMB-advanced.rmd’

--- re-building ‘RTMB-introduction.rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘RTMB-introduction.rmd’

SUMMARY: processing the following file failed:
  ‘RTMB-advanced.rmd’

Error: Vignette re-building failed.
Execution halted
ERROR r-devel-macos-arm64

tests

  Running ‘tinytest.R’ [0s/1s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
  > if (requireNamespace("tinytest", quietly=TRUE)) {
  +     tinytest::test_package("RTMB", ncpu=getOption("Ncpus", 1))
  + }
  starting worker pid=56958 on localhost:11773 at 15:02:07.770
  
  test-advector.R...............    9 tests OK  23ms
  
  test-bessel.R.................    6 tests OK  7ms
  
  test-distributions.R..........   18 tests OK  0.5s
  
   *** caught segfault ***
  address 0x1, cause 'invalid permissions'
  
  Traceback:
   1: eigen(x, symmetric = TRUE)
   2: eigen(x, symmetric = TRUE)
   3: matlog(x + (1 - diag(5)) * AD(0+1i) + diag(5) * 2)
   4: f(x)
   5: mode(current)
   6: attr.all.equal(target, current, tolerance = tolerance, scale = scale,     ...)
   7: all.equal.numeric(target, current, tolerance = tolerance, ...)
   8: all.equal(target, current, tolerance = tolerance, ...)
   9: fun(...)
  10: expect_equal(f(x), F(x), info = "symmetric complex eigen")
  11: eval(expr, envir = e)
  12: eval(expr, envir = e)
  13: FUN(X[[i]], ...)
  14: (function (X, FUN, ...) {    FUN <- match.fun(FUN)    if (!is.vector(X) || is.object(X))         X <- as.list(X)    .Internal(lapply(X, FUN))})(base::quote(c("/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-advector.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-bessel.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-distributions.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-factorize.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-model-spatial.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-model-spde.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-sparse.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-spline.R", "/Volumes/Builds/packages/sonoma-arm64/results/4.6/RTMB.Rcheck/RTMB/tinytest/test-tape.R")), FUN = base::quote(function (file, at_home = TRUE, verbose = getOption("tt.verbose",     2), color = getOption("tt.pr.color", TRUE), remove_side_effects = TRUE,     side_effects = FALSE, set_env = list(), encoding = "unknown",     ...) {    if (!file_test("-f", file)) {        stop(sprintf("'%s' does not exist or is a directory",             file), call. = FALSE)    }    t0 <- Sys.time()    if (length(set_env) > 0) {        old_env_var <- sapply(names(set_env), Sys.getenv, unset = NA_character_,             USE.NAMES = TRUE)        do.call(Sys.setenv, set_env)    }    oldwd <- getwd()    set_call_wd(oldwd)    grDevices::pdf(file = nullfile())    envvar <- new.env()    oldop <- new.env()    locale <- Sys.getlocale()    on.exit({        setwd(oldwd)        set_call_wd("")        Sys.unsetenv("TT_AT_HOME")        if (remove_side_effects) {            unset_envvar(envvar)            reset_options(oldop)            reset_locale(locale)        }        grDevices::dev.off()        if (exists("old_env_var")) {            unset <- is.na(old_env_var)            Sys.unsetenv(names(old_env_var)[unset])            if (any(!unset)) do.call(Sys.setenv, as.list(old_env_var)[!unset])        }    })    setwd(dirname(file))    file <- basename(file)    if (at_home)         Sys.setenv(TT_AT_HOME = TRUE)    o <- output()    e <- new.env(parent = globalenv())    add_locally_masked_functions(envir = e, output = o)    e$Sys.setenv <- capture_envvar(Sys.setenv, envvar)    e$options <- capture_options(options, oldop)    options(useFancyQuotes = FALSE)    Sys.setenv(R_TESTS = "")    sidefx <- new.env()    e$report_side_effects <- capture_se(report_side_effects,         sidefx)    do.call(e$report_side_effects, as.list(side_effects))    local_report_envvar <- capture(report_envvar, o)    local_report_cwd <- capture(report_cwd, o)    local_report_files <- capture(report_files, o)    local_report_locale <- capture(report_locale, o)    check_double_colon(filename = file)    parsed <- parse(file = file, keep.source = TRUE, encoding = encoding)    src <- attr(parsed, "srcref")    o$file <- file    prfile <- basename(file)    if (nchar(prfile) > 30) {        prfile <- paste0("..", substr(prfile, nchar(prfile) -             27, nchar(prfile)))    }    prfile <- gsub(" ", ".", sprintf("%-30s", basename(file)))    for (i in seq_along(parsed)) {        expr <- parsed[[i]]        o$fst <- src[[i]][1]        o$lst <- src[[i]][3]        o$call <- expr        if (!o$exit)             eval(expr, envir = e)        else break        local_report_envvar(sidefx)        local_report_cwd(sidefx)        local_report_files(sidefx)        local_report_locale(sidefx)        if (verbose == 2)             print_status(prfile, o, color, print = TRUE)    }    td <- abs(Sys.time() - t0)    tx <- humanize(td, color = color)    if (verbose == 1) {        str <- print_status(prfile, o, color, print = FALSE)        if (o$exit)             catf("%s %s %s\n", str, tx, o$exit_msg())        else catf("%s %s\n", str, tx)    }    if (verbose >= 2) {        str <- if (o$exit)             catf("%s %s\n", tx, o$exit_msg())        else catf("%s\n", tx)    }    test_output <- o$gimme()    structure(test_output, class = "tinytests", duration = td)}), at_home = base::quote(FALSE), verbose = base::quote(1), color = base::quote(TRUE),     remove_side_effects = base::quote(TRUE))
  15: do.call(msg$data$fun, msg$data$args, quote = TRUE)
  16: doTryCatch(return(expr), name, parentenv, handler)
  17: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  18: tryCatchList(expr, classes, parentenv, handlers)
  19: tryCatch(do.call(msg$data$fun, msg$data$args, quote = TRUE),     error = handler)
  20: doTryCatch(return(expr), name, parentenv, handler)
  21: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  22: tryCatchList(expr, classes, parentenv, handlers)
  23: tryCatch({    msg <- recvData(master)    if (msg$type == "DONE") {        closeNode(master)        FALSE    }    else if (msg$type == "EXEC") {        success <- TRUE        handler <- function(e) {            success <<- FALSE            structure(conditionMessage(e), class = c("snow-try-error",                 "try-error"))        }        t1 <- proc.time()        value <- tryCatch(do.call(msg$data$fun, msg$data$args,             quote = TRUE), error = handler)        t2 <- proc.time()        value <- list(type = "VALUE", value = value, success = success,             time = t2 - t1, tag = msg$data$tag)        msg <- NULL        sendData(master, value)        value <- NULL        TRUE    }    else {        TRUE    }}, interrupt = function(e) TRUE)
  24: workCommand(master)
  25: workLoop(makeSOCKmaster(master, port, setup_timeout, timeout,     useXDR, setup_strategy))
  26: tryCatch(parallel:::.workRSOCK, error = function(e) parallel:::.slaveRSOCK)()
  An irrecoverable exception occurred. R is aborting now ...
  Error in unserialize(node$con) : error reading from connection
  Calls: <Anonymous> ... FUN -> recvData -> recvData.SOCKnode -> unserialize
  Execution halted
ERROR r-devel-windows-x86_64

examples

Running examples in 'RTMB-Ex.R' failed
The error most likely occurred in:

> ### Name: OSA-residuals
> ### Title: Recursive quantile residuals
> ### Aliases: OSA-residuals oneStepPredict [.osa length.osa dim.osa
> ###   is.array.osa is.matrix.osa
> 
> ### ** Examples
> 
> set.seed(1)
> rw <- cumsum(.5*rnorm(20))
> obs <- rpois(20, lambda=exp(rw))
> func <- function(p) {
+   obs <- OBS(obs) ## Mark 'obs' for OSA calculation on request
+   ans <- 0
+   jump <- c(p$rw[1], diff(p$rw))
+   ans <- ans - sum(dnorm(jump, sd=p$sd, log=TRUE))
+   ans <- ans - sum(dpois(obs, lambda=exp(p$rw), log=TRUE))
+   ans
+ }
> obj <- MakeADFun(func,
+                  parameters=list(rw=rep(0,20), sd=1),
+                  random="rw")
Error in advector(e2) : 
  Invalid argument to 'advector' (lost class attribute?)
Calls: MakeADFun ... diff.advector -> diff_patch -> Ops.advector -> Arith2 -> advector
Execution halted
ERROR r-devel-windows-x86_64

re-building of vignette outputs

Error(s) in re-building vignettes:
--- re-building 'RTMB-advanced.rmd' using rmarkdown

Quitting from RTMB-advanced.rmd:236-239 [unnamed-chunk-21]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `advector()`:
! Invalid argument to 'advector' (lost class attribute?)
---
Backtrace:
    ▆
 1. └─RTMB::MakeTape(diff, numeric(5))
 2.   └─RTMB:::.MakeTape(f, x)
 3.     ├─base (local) f(x)
 4.     └─RTMB::diff.advector(x)
 5.       └─RTMB:::diff_patch(x, lag = lag, differences = differences, ...)
 6.         └─RTMB::Ops.advector(...)
 7.           ├─RTMB:::Arith2(advector(e1), advector(e2), .Generic)
 8.           └─RTMB::advector(e2)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RTMB-advanced.rmd' failed with diagnostics:
Invalid argument to 'advector' (lost class attribute?)
--- failed re-building 'RTMB-advanced.rmd'

--- re-building 'RTMB-introduction.rmd' using rmarkdown
--- finished re-building 'RTMB-introduction.rmd'

SUMMARY: processing the following file failed:
  'RTMB-advanced.rmd'

Error: Vignette re-building failed.
Execution halted
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 128.2Mb
  sub-directories of 1Mb or more:
    R       2.0Mb
    libs  125.3Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 129.0Mb
  sub-directories of 1Mb or more:
    R       2.0Mb
    libs  126.1Mb
NOTE r-oldrel-windows-x86_64

installed package size

  installed size is 10.3Mb
  sub-directories of 1Mb or more:
    R      1.1Mb
    libs   8.3Mb
OK r-patched-linux-x86_64

*


            

            

              

                OK
                r-release-linux-x86_64
              

              
*

              

            

            

              

                OK
                r-release-macos-arm64
              

              
*

              

            

            

              

                OK
                r-release-macos-x86_64
              

              
*

              

            

            

              

                OK
                r-release-windows-x86_64
              

              
*

              

            

          

        

      



      

      
      

        
Check History

        

          

            
              ERROR
              
                5 OK ·                 3 NOTE ·                 0 WARNING ·                 6 ERROR ·                 0 FAILURE              
              Mar 9, 2026
            
          

        

      


      
      

        
Reverse Dependencies (11)

        

          
depends

          

            LaMa
            RTMBdist
            ecostate
            fishgrowth
          

        

        

          
imports

          

            PKbioanalysis
            ctsmTMB
            dsem
            multiSA
            pmrm
            salmonMSE
            tsissm
          

        

      


      
      

        
Dependency Network

        

          
            

            
            
            Dependencies
            
            Reverse dependencies

            
            
            
            
            

            
            
            
            
            
            
            
            
            
            
            
            

            
            
              
              Rcpp
            
            
              
              Matrix
            
            
              
              TMB
            
            
              
              MASS
            

            
            
              
              LaMa
            
            
              
              RTMBdist
            
            
              
              ecostate
            
            
              
              fishgrowth
            
            
              
              PKbioanalysis
            
            
              
              ctsmTMB
            
            
              
              dsem
            
            
              
              multiSA
            
            
              
              pmrm
            
            
              
              salmonMSE
            
            
              
              tsissm
            

            
            
            RTMB
          
        

      


      
      

        
Version History

        

          

            new
            1.8
            Mar 9, 2026