Bioconductor Packages

Routines for the functional analysis of biological networks

Detect tissue heterogeneity in expression profiles with gene sets

BioTIP: An R package for characterization of Biological Tipping-Point

Biobase: Base functions for Bioconductor

Read and write GFF and GTF files

Programmatic Access to the Azul API

Utility and internal functions for Bioconductor packages

Write, containerize, publish and version Quarto books with Bioconductor

Functions to process a bioconductor build report database

Bioconductor-specific package checks

Illustration of FHIR ingestion and transformation using R

Manage Files Across Sessions

S4 generic functions used in Bioconductor

basilisk and hail

View Bioconductor Package Maintainer Information Interactively

Nearest Neighbor Detection for Bioconductor Packages

Bioconductor facilities for parallel evaluation

An interactive Shiny dashboard for Bioconductor package maintainers

Collection of simple tools for learning about Bioconductor Packages

Representing Different Biological Sets

Singular Value Decomposition for Bioconductor Packages

interface to python sklearn via Rstudio reticulate

Set the appropriate version of Bioconductor packages

Efficient manipulation of biological strings

This R package for performing module repertoire analyses and generating fingerprint representations

Cohort-aware methods for intrinsic molecular subtyping of breast cancer

Code for using BridgeDb identifier mapping framework from within R

A matrix data storage object held in temporary files

Microarray Data related methods that utlize BufferedMatrix objects

Infer Ligand-Receptor Interactions from bulk expression (transcriptomics/proteomics) data, or spatial transcriptomics

Bumpy Matrix of Non-Scalar Objects

Category encoding method for selecting feature genes for the classification of single-cell RNA-seq

Chromosmal Aberrations Finder in Expression data

Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Collection of annotation related methods for mass spectrometry data

Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics

A CAusal Reasoning tool for Network Identification (from gene expression data) using Integer VALue programming

Cytometry dATa anALYSis Tools

CBN2Path: an R/Bioconductor package for the analysis of cancer progression pathways using Conjunctive Bayesian Networks

plot bayesian network inferred from gene expression data based on enrichment analysis results

Case Control Allele Frequency Estimation

PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data

Plots For Visualising Cell-Cell Interactions

Clustering Deviation Index (CDI)

Co-expression Modules identification Tool

Statistical analysis for the Colony Formation Assay

An R package for analysis of case-control studies in genetic epidemiology

CGHbase: Base functions and classes for arrayCGH data analysis.

Normalization of array CGH data with imbalanced aberrations.