Bioconductor Packages

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

Annotations for City of Hope CpG Island Analysis Pipeline

Pre-processed data for use with the CellMapper package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Helper files for CopywriteR

Data Package for DMRcate

Example DNAm Data for DMRsegal

Orchestrating Blood Radiation Transcriptomic Data

Test Files for Single-Cell Droplet Utilities

Data for the ELMER package

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

Data for the EpiMix package

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

GEO accession data GSE103322 as a SingleCellExperiment

Data employed in the vignette of the GSVA package

Data used in the examples and vignettes of the GWASTools package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

Data for the Harman package

Processed Harmonized TCGA Data of Five Selected Cancer Types

Collection of Bulk RNA-Seq Experiments With Many Replicates

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

Annotation Package combining variant data from 1000 Genomes Project for Illumina HumanMethylation450 Bead Chip probes

LINCS Knock-Out Data Package

Marker gene information for LRcell R Bioconductor package

LegATo: Longitudinal mEtaGenomic Analysis Toolkit

M3Drop Example Data

Data package for Multi-Omics Factor Analysis (MOFA)

Collection of public MERFISH datasets

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Datasets for benchmarking in microbiome research

Multi-omics data access for studies investigating the effects of aging

Single-Cell -omics Data across Mouse Gastrulation and Early Organogenesis

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

Data for NxtIRF

Supporting data for package OMICsPCA