Bioconductor Packages

Software infrastructure for efficient representation of full genomes and their SNPs

Forge your own BSgenome data package

Computational pipeline for computing probability of modification from structure probing experiment data

Batch Effects Correction with Unknown Subtypes

Batch Effect Correction with Unknow Subtypes for scRNA-seq data

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage

Spatial transcriptomic clustering

R SDK for BaseSpace RESTful API

Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Batch Effects Quality Control Software

BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data

Clustering and Resolution Enhancement of Spatial Transcriptomes

Automatic RNA-Seq present/absent gene expression calls generation

Annotation and gene expression data retrieval from Bgee database. TopAnat, an anatomical entities Enrichment Analysis tool for UBERON ontology

Bias-free Footprint Enrichment Test

Processing and analyzing bisulfite sequencing data

Biclustering Analysis and Results Exploration

Binding site defintion based on iCLIP data

Functional Similarities

Model-View-Controller (MVC) Classes That Use Biobase

Biological Network Analysis in R

Biological Network Reconstruction Omnibus

Routines for the functional analysis of biological networks

BioTIP: An R package for characterization of Biological Tipping-Point

Biobase: Base functions for Bioconductor

Read and write GFF and GTF files

Programmatic Access to the Azul API

Utility and internal functions for Bioconductor packages

Write, containerize, publish and version Quarto books with Bioconductor

Functions to process a bioconductor build report database

Bioconductor-specific package checks

Illustration of FHIR ingestion and transformation using R

Manage Files Across Sessions

S4 generic functions used in Bioconductor

basilisk and hail

View Bioconductor Package Maintainer Information Interactively

Nearest Neighbor Detection for Bioconductor Packages

Bioconductor facilities for parallel evaluation

An interactive Shiny dashboard for Bioconductor package maintainers

Collection of simple tools for learning about Bioconductor Packages

Representing Different Biological Sets

Singular Value Decomposition for Bioconductor Packages

interface to python sklearn via Rstudio reticulate

Set the appropriate version of Bioconductor packages

Efficient manipulation of biological strings

This R package for performing module repertoire analyses and generating fingerprint representations

Cohort-aware methods for intrinsic molecular subtyping of breast cancer

A matrix data storage object held in temporary files

Microarray Data related methods that utlize BufferedMatrix objects