Bioconductor Packages

4,656 packages in the Bioconductor catalogue.

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Showing 51–100 of 2,480 packages

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Package	Category	Version	First Release	Last Release	Status
AssessORF Bioc Assess Gene Predictions Using Proteomics and Evolutionary Conservation	software	1.30.0	3.8	3.23	current
BADER Bioc Bayesian Analysis of Differential Expression in RNA Sequencing Data	software	1.50.0	2.13	3.23	current
BAGS Bioc A Bayesian Approach for Geneset Selection	software	2.51.0	2.13	3.23	current
BANDITS Bioc BANDITS: Bayesian ANalysis of DIfferenTial Splicing	software	1.28.0	3.9	3.23	current
BASiCS Bioc Bayesian Analysis of Single-Cell Sequencing data	software	2.24.0	3.6	3.23	current
BASiCStan Bioc Stan implementation of BASiCS	software	1.14.1	3.16	3.23	current
BBCAnalyzer Bioc BBCAnalyzer: an R/Bioconductor package for visualizing base counts	software	1.42.0	3.2	3.23	current
BEAT Bioc BEAT - BS-Seq Epimutation Analysis Toolkit	software	1.50.0	2.14	3.23	current
BERT Bioc High Performance Data Integration for Large-Scale Analyses of Incomplete Omic Profiles Using Batch-Effect Reduction Trees (BERT)	software	1.8.0	3.19	3.23	current
BEclear Bioc Correction of batch effects in DNA methylation data	software	2.28.0	3.1	3.23	current
BG2 Bioc Performs Bayesian GWAS analysis for non-Gaussian data using BG2	software	1.12.0	3.17	3.23	current
BLMA Bioc BLMA: A package for bi-level meta-analysis	software	1.36.0	3.5	3.23	current
BOBaFIT Bioc Refitting diploid region profiles using a clustering procedure	software	1.16.0	3.15	3.23	current
BPRMeth Bioc Model higher-order methylation profiles	software	1.38.0	3.4	3.23	current
BRAIN Bioc Baffling Recursive Algorithm for Isotope distributioN calculations	software	1.58.0	2.10	3.23	current
BSgenome Bioc Software infrastructure for efficient representation of full genomes and their SNPs	software	1.80.0	1.9	3.23	current
BSgenome.Alyrata.JGI.v1 Bioc Arabidopsis lyrata full genome (JGI version V1.0)	annotation	1.0.1		3.23	current
BSgenome.Amellifera.BeeBase.assembly4 Bioc Full genome sequences for Apis mellifera (BeeBase assembly4)	annotation	1.4.0		3.23	current
BSgenome.Amellifera.NCBI.AmelHAv3.1 Bioc Full genome sequences for Apis mellifera (Amel_HAv3.1)	annotation	1.5.0		3.23	current
BSgenome.Amellifera.UCSC.apiMel2 Bioc Full genome sequences for Apis mellifera (UCSC version apiMel2)	annotation	1.4.0		3.23	current
BSgenome.Amellifera.UCSC.apiMel2.masked Bioc Full masked genome sequences for Apis mellifera (UCSC version apiMel2)	annotation	1.3.99		3.23	current
BSgenome.Aofficinalis.NCBI.V1 Bioc Asparagus officinalis (Garden asparagus) full genome (NCBI version Aspof.V1)	annotation	1.0.0		3.23	current
BSgenome.Athaliana.TAIR.04232008 Bioc Full genome sequences for Arabidopsis thaliana (TAIR version from April 23, 2008)	annotation	1.3.1000		3.23	current
BSgenome.Athaliana.TAIR.TAIR9 Bioc Full genome sequences for Arabidopsis thaliana (TAIR9)	annotation	1.3.1000		3.23	current
BSgenome.Btaurus.UCSC.bosTau3 Bioc Full genome sequences for Bos taurus (UCSC version bosTau3)	annotation	1.4.0		3.23	current
BSgenome.Btaurus.UCSC.bosTau3.masked Bioc Full masked genome sequences for Bos taurus (UCSC version bosTau3)	annotation	1.3.99		3.23	current
BSgenome.Btaurus.UCSC.bosTau4 Bioc Full genome sequences for Bos taurus (UCSC version bosTau4)	annotation	1.4.0		3.23	current
BSgenome.Btaurus.UCSC.bosTau4.masked Bioc Full masked genome sequences for Bos taurus (UCSC version bosTau4)	annotation	1.3.99		3.23	current
BSgenome.Btaurus.UCSC.bosTau6 Bioc Full genome sequences for Bos taurus (UCSC version bosTau6)	annotation	1.4.0		3.23	current
BSgenome.Btaurus.UCSC.bosTau6.masked Bioc Full masked genome sequences for Bos taurus (UCSC version bosTau6)	annotation	1.3.99		3.23	current
BSgenome.Btaurus.UCSC.bosTau8 Bioc Full genome sequences for Bos taurus (UCSC version bosTau8)	annotation	1.4.2		3.23	current
BSgenome.Btaurus.UCSC.bosTau9 Bioc Full genome sequences for Bos taurus (UCSC version bosTau9)	annotation	1.4.2		3.23	current
BSgenome.Btaurus.UCSC.bosTau9.masked Bioc Full masked genome sequences for Bos taurus (UCSC version bosTau9)	annotation	1.4.4		3.23	current
BSgenome.Carietinum.NCBI.v1 Bioc Cicer arietinum (Chickpea) full genome (NCBI version ASM33114v1)	annotation	1.0.0		3.23	current
BSgenome.Celegans.UCSC.ce10 Bioc Full genome sequences for Caenorhabditis elegans (UCSC version ce10)	annotation	1.4.0		3.23	current
BSgenome.Celegans.UCSC.ce11 Bioc Full genome sequences for Caenorhabditis elegans (UCSC version ce11)	annotation	1.4.2		3.23	current
BSgenome.Celegans.UCSC.ce2 Bioc Full genome sequences for Caenorhabditis elegans (UCSC version ce2)	annotation	1.4.0		3.23	current
BSgenome.Celegans.UCSC.ce6 Bioc Full genome sequences for Caenorhabditis elegans (UCSC version ce6)	annotation	1.4.0		3.23	current
BSgenome.Cfamiliaris.UCSC.canFam2 Bioc Full genome sequences for Canis lupus familiaris (UCSC version canFam2)	annotation	1.4.0		3.23	current
BSgenome.Cfamiliaris.UCSC.canFam2.masked Bioc Full masked genome sequences for Canis lupus familiaris (UCSC version canFam2)	annotation	1.3.99		3.23	current
BSgenome.Cfamiliaris.UCSC.canFam3 Bioc Full genome sequences for Canis lupus familiaris (UCSC version canFam3)	annotation	1.4.0		3.23	current
BSgenome.Cfamiliaris.UCSC.canFam3.masked Bioc Full masked genome sequences for Canis lupus familiaris (UCSC version canFam3)	annotation	1.3.99		3.23	current
BSgenome.Cjacchus.UCSC.calJac3 Bioc Full genome sequences for Callithrix jacchus (UCSC version calJac3)	annotation	1.4.2		3.23	current
BSgenome.Cjacchus.UCSC.calJac4 Bioc Full genome sequences for Callithrix jacchus (UCSC version calJac4)	annotation	1.5.0		3.23	current
BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1 Bioc Full Genome Sequence for Cryptococcus neoformans var. grubii KN99 (ASM221672v1)	annotation	1.0.0		3.23	current
BSgenome.Creinhardtii.JGI.v5.6 Bioc Full genome sequences for Chlamydomonas reinhardtii (v5.6)	annotation	1.5.0		3.23	current
BSgenome.Dmelanogaster.UCSC.dm2 Bioc Full genome sequences for Drosophila melanogaster (UCSC version dm2)	annotation	1.4.0		3.23	current
BSgenome.Dmelanogaster.UCSC.dm2.masked Bioc Full masked genome sequences for Drosophila melanogaster (UCSC version dm2)	annotation	1.3.99		3.23	current
BSgenome.Dmelanogaster.UCSC.dm3 Bioc Full genome sequences for Drosophila melanogaster (UCSC version dm3)	annotation	1.4.0		3.23	current
BSgenome.Dmelanogaster.UCSC.dm3.masked Bioc Full masked genome sequences for Drosophila melanogaster (UCSC version dm3)	annotation	1.3.99		3.23	current