Bioconductor Packages

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

View AnnotationHub and ExperimentHub Resources Interactively

View Bioconductor Package Maintainer Information Interactively

"CITEViz: Classifying Cell Clusters in CITE-Seq Data using the Flow Cytometry Gating Workflow"

Peripheral blood CITE-Seq dataset with 10K cells for use with CITEViz tutorial

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Genomic coordinates of CTCF binding sites, with orientation

Analysis of single-cell epigenomics datasets with a Shiny App

Helper files for CopywriteR

GUI's for visualization of flow cytometry data analysis pipelines

A set of annotation maps describing the entire Disease Ontology

Graphical Exploration of Design Matrices

GExPipe: Gene Expression Pipeline Shiny Application

Genomics explorer using statistical and survival analysis in R

A set of annotation maps describing the entire Gene Ontology

Gene Set Enrichment Analysis Interactive Explorer

Defining and visualizing the distances between different genesets

Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

A set of annotation maps describing the entire Human Disease Ontology

A set of annotation maps describing the entire Human Phenotype Ontology

Data package for JASPAR databases

Data package for JASPAR 2018

Data package for JASPAR database (version 2020)

Data package for JASPAR database (version 2022)

Data package for JASPAR database (version 2024)

LowMACAAnnotation

LymphoSeq annotation databases

A set of annotation maps describing the Mouse Phenotype Ontology

MSstats GUI for Statistical Anaylsis of Proteomics Experiments

Shiny-based interactive data-quality exploration for omics data

Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data

Motif Identification and Validation

Orthology mapping package

Interactive web application for Omics-data analysis

A phosphoproteomics data analysis package with an interactive ShinyApp

Annotation data for the TENET package

Thermal Shift Analysis in R

A Better Way To Explore What Is Best

Interactive Exploration & Management of RNA-Seq Analyses

Queries the Human Cell Atlas

Visualization Techniques for Clonal Evolution

Genomic coordinates of problematic genomic regions

Genomic coordinates of problematic genomic regions

Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells

Umbrella package for R packages in the gDR suite

Processing functions and interface to process and analyze drug dose-response data

Input data for the geneplast package