Bioconductor Packages

An ExperimentHub package for accessing processed RLSuite data sets

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Supporting datasets for SBGNview package

A bioconductor package for sample quality check with next generation sequencing data

Integrating Multi-modal Single Cell Experiment datasets

Somatic Cancer Alterations

Annotation data for the TENET package

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

Data for the VariantTools tutorial

Whole Exome Sequencing (WES) of chromosome 22 401st to 500th exon from the 1000 Genomes (1KG) Project by the Washington University Genome Sequencing Center (WUGSC).

Mappability tracks of Whole-genome Sequencing from the ENCODE Project

RangedSummarizedExperiment for RNA-Seq in airway smooth muscle cells, by Himes et al PLoS One 2014

Data for testing of the package blima.

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Connectivity Map (version 2) Data

CEU (N=60) genotypes from 1000 genomes pilot phase I

expression + genotype on 79 unrelated CEU individuals

ceuhm3: genotype (HapMap phase III) and expression data for CEPH CEU cohort

resources for genetics of gene expression based on Cheung et al 2010

cn.mops - Mixture of Poissons for CNV detection in NGS data

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Curated breast cancer gene expression data with survival and treatment information

Curated Prostate Cancer Data

Curation of existing tuberculosis transcriptomic studies

Genomic coordinates of problematic genomic regions

Cancer Dependency Map Data Package

Example data for the dyebias package, which implements the GASSCO method.

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

Genomic coordinates of problematic genomic regions

Illumina DASL example microarray data

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.

Auxillary data for gage package

Experimental data for showing functionalities of the genomation package

summarized experiment with expression data from GEUVADIS

Sample data - Hapmap 100K HIND Affymetrix

Sample data - Hapmap 100K XBA Affymetrix

Sample data - Hapmap 500K NSP Affymetrix

Sample data - Hapmap 500K STY Affymetrix

Sample data - Hapmap SNP 5.0 Affymetrix

Sample data - Hapmap SNP 6.0 Affymetrix

Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

CellScore Standard Cell Types Expression Dataset [hgu133plus2]

Unknown annotation data (chip hguDKFZ31)

Unknown annotation data (chip hgubeta7)