Bioconductor Packages

Computational pipeline for computing probability of modification from structure probing experiment data

Differentially Methylated CpG using Hidden Markov Model

Error correction tool for noisy genotyping by sequencing (GBS) data

HiCPotts: Hierarchical Modeling to Identify and Correct Genomic Biases in Hi-C

An R package for nucleosome positioning prediction

Detecting Uniparental Disomy through NGS trio data

A Hidden Markov Model Approach for Identifying Differentially Methylated Sites and Regions for Beta-Valued DNA Methylation Data

Epigenomic R-based analysis with hidden Markov models

Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections

Bayesian Hidden Markov Model for the detection of differentially methylated regions

Integrated Copy Number Variation detection

Infer Copy Number Variation from Single-Cell RNA-Seq Data

Imputation-guided re-construction of complete methylomes from WGBS data

Generation of null ranges via bootstrapping or covariate matching

Infer locally aneuploid cells using single cell RNA-seq data

Identification and classification of plant transcription factors