Bioconductor Packages

Basic peak calling on STARR-seq data

Extending guilt by association by degree

Tools for spliced gene structure manipulation and analysis

Delineate outstanding genomic zones of differential gene activity

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data

Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets

R wrapper for the OMA REST API

Phenotype Consensus ANalysis (PCAN)

piRNA Cluster Builder

PhyloProfile

R package for RIVER (RNA-Informed Variant Effect on Regulation)

Gene regulator enrichment analysis

Smooth modeling of bisulfite sequencing

Surface Protein Prediction and Identification

Package for prediction of zygosity for variants/genes in NGS data

Candidate Gene Miner

circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs

On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

An R package to predict condition-specific enhancers from ChIP-seq data

Inference of Genetic Variants Driving Cellular Phenotypes

Package to Draw Protein Schematics from Uniprot API output

Investigate iLINCS for candidate repurposable drugs

epidecodeR: a functional exploration tool for epigenetic and epitranscriptomic regulation

Functional Annotation of Custom Transcriptomes

Functional analysis of metabolic and transcriptomic data

Fast functional enrichment for interactive applications

GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction

A Comprehensive Workflow for Long Non-coding RNA Identification and Functional Analysis

Identification of domain isotypes in pfam data

Identification and classification of plant transcription factors

Pathway RespOnsive GENes for activity inference from gene expression

Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Counting Reads in High-Throughput Sequencing Screens

Seahtrue revives XF data for structured data analysis

Virtual Inference of Protein-activity by Enriched Regulon analysis